Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1079 ATGTTTCAGTTTCATCCTCAAGGAGATACCAAACAGAAACAGACTTGTACTCTGCTTGCTGTCACTTGTGGCTCAAGTTTTGAGCAGCAGAAGCCCTCACAAAATCAGCATAATTACCCTTTCCCTGAATTAGTTTCCACGGGGCTTCTCGAGGTTCAAACTCTGAGCAATCCAGAAAAGGAACAGTTTCGTAAAATTCTTGAGTCATATCAACCGAATATTGTTTACTTACAGGGAGAGCAGCTACCGAATGGTGAAGTTGGTTCACTGGTTTGGCAGGGTGTGGAGTTGTCCACTCTTGAAGCTATAACAGAGCTCTTTGGTCCCACATTGCCGACTACCAGTCGTGCCTTTAGATGGTTTGGACATGTGTGGGGGAGACCGATAGAAGCCCCCATAAGGAGAGTAGATCAAATGGAAGCTAACCCAATTCCTGGAGGAAGAGGGAGACTAAGGAAAACCATACGGGAAATGATCAAGAAAGACTTAGAGCTCAATGCTTTGTCAATGAACATGATTTATGATAGAGCATTATGGTGTCTCAGCATTGTAGGTATGGTTTATTTAGAAATCCCAAATGGGGAAAGTTTCGCAGTGTCTCTTCGGCTTAAGGGAATCCCATATGTGATATATTGGAAGAATGTTTTTTCTTGCTATGCTGCATGCCATTTTCGTCAAGCATTTCTTTCAGTGATGCAGAGTTCATCTGCGCATACATGGGATGCTTTCCGCTTAGCACTTGCCTCTTTTGATCTTTACTGCGGTGAAAGCAATCAAGTGCTTTTTTATGATGGACATAATACTAATTGCGAGGTGGGGCCTCACCTTCTTGGCAACCTTCTCCAAATTAATGCTGACCCTCCTGAGATGGGTGAAGTTGATGAAGAAAATTCCTCAGGCAGTCTTCCTGACATAACGATACATGATGATGAAGTGAACTTGAGATTTCTTGTCTGCGGTGCACCTTCCACAGTTGATGAGTCATTGCTAAGATCATTGGAGGACGGACTCAGAGCTCTCTTAACTATTGAAATACGTGGTTGCAAGCTCCATGGCAAGTTTAGTGCTCCCCCACCACCTCTTCAGGCAGCCGATTTTTCTCGTGGAGTTGTGACCATGCGATGCGATATATCAACCTGTAGTTCTGCATATATCTCACTTTTGGTATCAGGCAGTGCACAAACTTTATTTAGTGATCAGCTCTTGGAGAGTCATATAAAAAATGAGATAATTGAGAAGAGTCAACTAGTTCATGCACGACTCAACAATGAGGGGAACAAACAGACTGTCTCTGAACCTCGCAGATCTGCTTCAATTGCTTGTGCAGCAACAGTATTTGAAATTTGCATGAAGCTTCCACAATGGGCTTTGCAGATTTTGAGACAGCTAGCACCTAATGTTTCTTATCGAAGTTTAGTTGCACTTGGCATTGCTAGTATTCAGGGTCTACCTGTAGCTTCTTTTAAGAAAGATGATGCTGAGCGCTTACTGTTCTTCTATCAAATCAGTGAGAAAGATAGCTGTACACGCAACATAATTTTTAGCAACCCTCCTGGTTGGTTGAAACCACCACCTCCTACTAGAAAGAGGTGTGAACCAAGCCAAGGAGCTAGCTCCGGACCCCGTGATGGTTCCTTTGCAGGGCAAGGTGCTGTTCGGAAAGTAGATGAGGAGGAAAAGGATAGAAAAGTGGTGAATGGGACGACTAGCACAACCTTAAGTCCAGCTAGGCAAATATTAAAAGTATCTGCAATGAGGCCTATTCCTCATTCACATCGCCATAGAATGACACCATTTTGTGGGCCTTCTGAGACAAGTGGTTTTGATAGTGCCCAAGTTGAGTCTAATTTGCCTCTTGTTGCCCCTACAAAGCGGATTAGTATTGGACCAACACCTGCAACACAGAGAAAATCATTTGCATCCTCAGCTCAGTCTAAGCAGGTTATTTCATTAAACCCATTGCCCTTGAGGAAACATGGTTGTGGCAGAGGCCCAGTGCAGATTTGCTCTGAGGAGGAATTTCTTAAGGATGTCATGGAGTTTTTGATTCTTCGTGGATATAATCGATTGATTCCTCGGGGAGGGATAACTGAGTTCCCTGAAGCCATACTCAACGGAAAACGCCTTGATCTCTATAACTTGTATAAAGAGGTGGTTACCAGGGGAGGATTCCATGTTGGCAATGGCATCAACTGGAAGGGACAAATCTTCTCAAAGATGTGCAATTACACATCCACCAATAGAATGACTGGTGTCGGAAATACGCTCAAAAGACATTATGAAACCTACCTTCTAGAATATGAATTAGCACATGATGATGTGGATGGAGAGTGCTGCTTGTTGTGTCACAGTAGTGCAGCTGGGGATTGGGTGAATTGTGGCATATGTGGTGAATGGGCCCACTTTGGCTGTGATAGAAGGCAAGGTCTTGGCGCATTCAAGGATTATGCAAAAACAGATGGGCTAGATTATATATGTCCTCATTGTAGTGTTACAAATTTGAGGAAGAAACAAAGTGTTGTTAATGGGTATTCTCAAGGGTCAATGTCATCACAACAACCCCTTTGA 2568 0.4342 MFQFHPQGDTKQKQTCTLLAVTCGSSFEQQKPSQNQHNYPFPELVSTGLLEVQTLSNPEKEQFRKILESYQPNIVYLQGEQLPNGEVGSLVWQGVELSTLEAITELFGPTLPTTSRAFRWFGHVWGRPIEAPIRRVDQMEANPIPGGRGRLRKTIREMIKKDLELNALSMNMIYDRALWCLSIVGMVYLEIPNGESFAVSLRLKGIPYVIYWKNVFSCYAACHFRQAFLSVMQSSSAHTWDAFRLALASFDLYCGESNQVLFYDGHNTNCEVGPHLLGNLLQINADPPEMGEVDEENSSGSLPDITIHDDEVNLRFLVCGAPSTVDESLLRSLEDGLRALLTIEIRGCKLHGKFSAPPPPLQAADFSRGVVTMRCDISTCSSAYISLLVSGSAQTLFSDQLLESHIKNEIIEKSQLVHARLNNEGNKQTVSEPRRSASIACAATVFEICMKLPQWALQILRQLAPNVSYRSLVALGIASIQGLPVASFKKDDAERLLFFYQISEKDSCTRNIIFSNPPGWLKPPPPTRKRCEPSQGASSGPRDGSFAGQGAVRKVDEEEKDRKVVNGTTSTTLSPARQILKVSAMRPIPHSHRHRMTPFCGPSETSGFDSAQVESNLPLVAPTKRISIGPTPATQRKSFASSAQSKQVISLNPLPLRKHGCGRGPVQICSEEEFLKDVMEFLILRGYNRLIPRGGITEFPEAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMCNYTSTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLDYICPHCSVTNLRKKQSVVNGYSQGSMSSQQPL 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1079 855 MobiDBLite consensus disorder prediction 515 572 - -
Lal18g1079 855 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 772 834 IPR013083 -
Lal18g1079 855 CDD PHD_ARID4_like 778 829 - -
Lal18g1079 855 Gene3D - 666 771 IPR036431 GO:0003677
Lal18g1079 855 SMART ARID_2 665 768 - -
Lal18g1079 855 SUPERFAMILY FYVE/PHD zinc finger 771 838 IPR011011 -
Lal18g1079 855 CDD ARID 670 768 - -
Lal18g1079 855 Pfam ARID/BRIGHT DNA binding domain 671 768 IPR001606 GO:0003677
Lal18g1079 855 SUPERFAMILY ARID-like 669 783 IPR036431 GO:0003677
Lal18g1079 855 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 10 114 IPR042293 -
Lal18g1079 855 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 182 842 IPR042293 -
Lal18g1079 855 ProSiteProfiles ARID domain profile. 668 772 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1079 Lal-Chr18 13850656 13861222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1079 187 843 ARID Transcription Factor Family AT3G43240 61.912 0.0 818
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lal18g1079 ARID 5.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1079 - - gmx:100816540 1157.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0523 22 3474329 3482962 Lal18g1079 18 13850656 13861222 LSH