Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1076 ATGGATTCAATCAAGTCCTTCAAGGGCTACGGTAAAGTAGATGAACTCGAGCAACAAGCCTATCAGAAGAAGACACGTAAGCGTCTTATAATCTTGATAGTCTCATTTGTGGTCCTATTAGCGGTGATTGTAGCTGCTGTAACAGGAACCGTGATACACAAGCGCAACACTTCATCTAACTCGGTTCCACAAACTGAGTTAGCCCCTGCCGCGTCACTCAAAGCAGTTTGCGATGTGACTCAGTACCCTATCTCGTGCTTTGCCGCCATTTCCTCACTTCCGAATTCGAACACCACTGATTCTAAGCTTCTCTTCATGCTCTCTCTCCGTGTCGCCATTGATGAACTCTCCAAGCTTTCGAGCTTCACTCCGAAGCTTCGCGACAATGCGAAAAGCGATCCACGCCTCCAGAAAGCGATTGATGTGTGCGGAACGGTTTTCGAAGACGCGCTGGATCAACTCAATGATTCGATCTCGTCGATGGGAAACTCTAGCGCCGGAAAAGTGTTACCGTCATCGGAGATCAGCGACTTGGAAACCTGGCTCAGCGCTGTAATGACAAACCAGGAAACATGCATCGATGCCGTCGGAGAACTTAACTCGACCGCCGCGCGCGGTGTTCTCCGGGAAATTGAAACCGTCACGAGAAACTCCACTGAGTTCGTTAGCAATAGCTTATCCATTGTCACACGAATCCTCGGGCTTCTCTCGAAGTTCAATGCTCCGATCCACCAGAGGAAGTTGCTAGGGTTTGGAGGTTCCGATTCGGAGTTTCCGGCATGGGTAGGGACAGCGGAGCGGAGGCTGCTGCAGTCGAACGTGACGGCGCCGGATGCGGTGGTCGCAAAGGATGGGAGCGGGCAATTCAAGACGATAGGGGAAGTATTGAAGTTGGTGAAGAAGAAGAGTTTAACAAGGTTCGTGGTGTATGTGAAGGCAGGGACTTACATTGAGAACATTGATTTGGATAAGAATACATGGAATGTGATGATTACCGGTGACGGCAAGGATAAGACCATCGTCTCCGGCAGTCGCAACTTCAAGGACGGCACCCCCACTTTTGAGACCGCCACTTTCGCTGTTAAGGGAAAGGGATTCATTGCCAAAGACATAGGGTTCCATAACACTGCAGGTGCAGAAAAGCACCAGGCGGTTGCCCTTCGATCTGGTTCGGATCAATCTGTGTTCTACAGGTGCTCATTTGTGGGATTCCAGGATACTCTCTATGCTCATTCGAACCGGCAATTCTACCGCGAATGTGACATTACAGGCACCATTGATTTCATATTTGGCAATGCAGCTGTTGTGTTCCAAAATTGCAAAATCATGCCTAGGCAACCTATGTCAAACCAGTTCAACACCATCACAGCTCAGGGCAAGAAAGACCCCAACCAGAACACTGGAATTGTAATCCAAAAATCAGTAATCACTACCCTTGATAATGATATTCTCACAGCTCCTACATACCTTGGTAGACCTTGGAAAGATTTCTCTACCACTATTATCATGCAAACTGATATTGGGTCTTTCTTGAAACCAGTGGGGTGGATTAGTTGGGTCCCCAATGTGGATCCTGTAAGTACCATTTTTTATGCTGAATATCAGAATAGTGGGCCAGGTGCAGGTGTGTCCCAAAGGGTTACATGGGCTGGTTATAAACCTAGTCTCACAGATGATGAAGCAGTGAAGTTCACTGTACAAACCTTTATCCAAGGCCCAGAGTGGTTACCAAACACTGCTGTGGAGTTTGAGTCTACCTTGTAA 1764 0.4802 MDSIKSFKGYGKVDELEQQAYQKKTRKRLIILIVSFVVLLAVIVAAVTGTVIHKRNTSSNSVPQTELAPAASLKAVCDVTQYPISCFAAISSLPNSNTTDSKLLFMLSLRVAIDELSKLSSFTPKLRDNAKSDPRLQKAIDVCGTVFEDALDQLNDSISSMGNSSAGKVLPSSEISDLETWLSAVMTNQETCIDAVGELNSTAARGVLREIETVTRNSTEFVSNSLSIVTRILGLLSKFNAPIHQRKLLGFGGSDSEFPAWVGTAERRLLQSNVTAPDAVVAKDGSGQFKTIGEVLKLVKKKSLTRFVVYVKAGTYIENIDLDKNTWNVMITGDGKDKTIVSGSRNFKDGTPTFETATFAVKGKGFIAKDIGFHNTAGAEKHQAVALRSGSDQSVFYRCSFVGFQDTLYAHSNRQFYRECDITGTIDFIFGNAAVVFQNCKIMPRQPMSNQFNTITAQGKKDPNQNTGIVIQKSVITTLDNDILTAPTYLGRPWKDFSTTIIMQTDIGSFLKPVGWISWVPNVDPVSTIFYAEYQNSGPGAGVSQRVTWAGYKPSLTDDEAVKFTVQTFIQGPEWLPNTAVEFESTL 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1076 587 PANTHER PECTINESTERASE 1-RELATED 8 584 - -
Lal18g1076 587 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 73 233 IPR035513 -
Lal18g1076 587 SUPERFAMILY Pectin lyase-like 274 584 IPR011050 -
Lal18g1076 587 Pfam Pectinesterase 278 572 IPR000070 GO:0030599|GO:0042545
Lal18g1076 587 Gene3D - 272 587 IPR012334 -
Lal18g1076 587 ProSitePatterns Pectinesterase signature 2. 422 431 IPR033131 -
Lal18g1076 587 Gene3D Invertase/pectin methylesterase inhibitor family protein 71 233 IPR035513 -
Lal18g1076 587 SMART PMEI_2 68 228 IPR006501 GO:0004857
Lal18g1076 587 Pfam Plant invertase/pectin methylesterase inhibitor 73 228 IPR006501 GO:0004857
Lal18g1076 587 TIGRFAM PME_inhib: pectinesterase inhibitor domain 56 230 IPR006501 GO:0004857
Lal18g1076 587 CDD PMEI-like_3 75 232 - -
Lal18g1076 587 PANTHER PECTINESTERASE 8 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1076 Lal-Chr18 13825625 13828727 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1076 1 581 Carbohydrate Esterase AT1G53840 58.433 0.0 678
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1076 - - lang:109360530 1014.99