Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1065 ATGGAATCTGCTATTCAAGGAGTGAAAGGATTTTCTGATAGCAGAGAAGAAGAAGAGGAAGAGGGAGCAACAACAGAAGAAATCATCACAAGAGAAGAAAGCAATAGCAATGCAACATCTCACAATTCATCATCTGGGTTAGGGTTACACCAACAAGAAGCTGCATCTTCCAATTTCATGAATCATCATCACACAAAGCAGATAGAGTTCATGGACTTGTCACTTGGCGGCAGCAACAACAAAGATATAAACATGAATAATGATGAAGCCAATTTTCAACAAGGATCTCAATCTTCACAAGCTATTATAACTGAGAAAGAGCACATGTTTAATAAAGTGGTGACACCTAGTGATGTAGGGAAGCTGAACAGGTTGGTGATACCAAAACAGCATGCTGAGAAGTATTTCCCTCTTGATACAACCACAAATGAGAAAGGCCTTTTGCTCAATTTTGAAGATAGAAATGGGAAATTGTGGAGGTTCAGGTACTCCTATTGGAACAGCAGCCAAAGCTATGTGATGACCAAAGGGTGGAGCCGTTTTGTTAAAGAGAAGAAGCTCGATGCTGGTGACATTGTATCGTTCCATCGTGGCATAGGCGAGTTGAACAGGCATAGGTTGTTTATTGATTGGAGAAGAAGGCCTAATCAATATCATGGAGGTGTTGGTGTACTTGATCCTAATTCAGGAACACTTATTGCTCCTTTGTTTCTTCCAAATCAGCCACACTTGTCACAGTACTCTATTAGATGGGGTGGTAGATTATACTCTCTGCCTTCACCTCCACCAACACAACAAACAAGGCACCACCACCATGAACATTTTCAGCACCTCAATTACAACAATATCTACCCCTTTCATCACCATGGTGGCGGTGGAAGTGGAAGTCATCACTACATGAACAACTATAATGAGGTGAGTAATTCAGGATCTGGCTCACTCTATTACCTGAGATCAACAACACCTTCAATGCAAATGAGTGATCATCAAAGCTTTATGGCAAGGCAACAACAACAACAACATGAGGGAGGAGTTAATAATATTGCTCCTATGATTATTGATTCAGTGCCTGTTGCTCATCATCATCAACAACAACACCATGGTGGTAAGAGTGGTACTAGTAGTAGTAATAATACTAACAGTGCATCAAAAAGACTAAGGCTATTTGGTGTGAACATGGAATGTGGTTCTTCACCATCAGAAGACACCAAATGTTGCACTGTATCACATGCCTCTTCTTCTCTACAGCCACTTTCAACATCAGCAAGGGTTGGAGATAATCAAAGAGGGGAAGCTTCAATGCATTTTGATTTAGACCCATCTTTGCAATACCACAGGCAGTGA 1344 0.4092 MESAIQGVKGFSDSREEEEEEGATTEEIITREESNSNATSHNSSSGLGLHQQEAASSNFMNHHHTKQIEFMDLSLGGSNNKDINMNNDEANFQQGSQSSQAIITEKEHMFNKVVTPSDVGKLNRLVIPKQHAEKYFPLDTTTNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFHRGIGELNRHRLFIDWRRRPNQYHGGVGVLDPNSGTLIAPLFLPNQPHLSQYSIRWGGRLYSLPSPPPTQQTRHHHHEHFQHLNYNNIYPFHHHGGGGSGSHHYMNNYNEVSNSGSGSLYYLRSTTPSMQMSDHQSFMARQQQQQHEGGVNNIAPMIIDSVPVAHHHQQQHHGGKSGTSSSNNTNSASKRLRLFGVNMECGSSPSEDTKCCTVSHASSSLQPLSTSARVGDNQRGEASMHFDLDPSLQYHRQ 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1065 447 SUPERFAMILY DNA-binding pseudobarrel domain 106 213 IPR015300 -
Lal18g1065 447 Pfam B3 DNA binding domain 110 214 IPR003340 GO:0003677
Lal18g1065 447 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 56 433 - -
Lal18g1065 447 SMART B3_2 110 215 IPR003340 GO:0003677
Lal18g1065 447 MobiDBLite consensus disorder prediction 400 427 - -
Lal18g1065 447 MobiDBLite consensus disorder prediction 29 48 - -
Lal18g1065 447 CDD B3_DNA 108 197 IPR003340 GO:0003677
Lal18g1065 447 ProSiteProfiles B3 DNA-binding domain profile. 110 215 IPR003340 GO:0003677
Lal18g1065 447 MobiDBLite consensus disorder prediction 358 381 - -
Lal18g1065 447 MobiDBLite consensus disorder prediction 1 48 - -
Lal18g1065 447 Gene3D - 103 221 IPR015300 -
Lal18g1065 447 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 56 433 IPR044800 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1065 Lal-Chr18 13711327 13713479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1065 103 398 RAV Transcription Factor Family AT2G46870 45.791 3.83e-77 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lal18g1065 B3 1.8e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1065 - - lja:Lj3g3v2520080.1 418.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1065 18 13711327 13713479 Lal18g1065 18 13711327 13713479 ECH
Lal6g0601 6 3855351 3857717 Lal18g1065 18 13711327 13713479 LSH
Lal22g0540 22 3605095 3609517 Lal18g1065 18 13711327 13713479 LSH