Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1059 ATGCCTGAAAACATGAGTATATCTGTGAATGGACAATCTCAAGTTCCCCCTGGCTTCCGTTTTCATCCAACTGAAGAAGAGCTTCTTCTGTACTACTTGAGGAAGAAAGTCTCATATGAGAAGATTGACCTTGATGTGATTCGAGATGTTGATCTCAACAAGCTTGAACCATGGGACATACAAGAGAAGTGCAAAATAGGAACCACCCCACAAAATGATTGGTATTTTTTCAGCCACAAAGACAAGAAGTATCCCACTGGAACCCGCACCAATCGTGCCACCGCTGCTGGGTTCTGGAAGGCCACTGGCCGTGACAAGGTAATATACAGCAACGGGAAGAGAATTGGAATGAGGAAGACTCTTGTTTTCTACAAAGGTCGTGCACCTCATGGCCAAAAATCTGATTGGATCATGCATGAATATAGACTAGACGACAATAACATCAATGACACCACTATTGTGTCCAATGCCATGGGAGATGGAGGCCAAGAAGAAGGATGGGTGGTGTGTAGAATATTCAAGAAGAAGAACCATCTCAAAACCCTAGACAATCCCTTTGCCTCTTCCATCTCTGGGGAAGGAAGAAGAAGCCATTTGTTTGATTCTTGTGATGATGGAGCTTTGGAGCAAATTCTCCAACAAATGGGAAATGGTACTTGCAAGGAAGAGAACTATGAAGCCAAAAACTACAATAATGGAAGGTATGCTAGGCCGTTTCACACAGGTATCAGCAATAATGGAAACTACCATGACAATAGGTTCATGAAACTCCCAAGCCTAGAGAGTCCAAAATCAATTAACATGGAGAGCCAACAAAATAACAATAATGATAACAATACTAATAATGGGTACCACCCCATTATTCCTGTAGATATGGTCACAGAAAATGAAGGATCATTCACAACCCACCAGGACCCCAACATGGTTCATCATAATCCATTGGACGCATCATCATCAATGGTGGTAGGATCAGGTGGCCTTACAAATTGGGCAGCCCTTGATAGACTTGTAGCTTCTCAGCTGAATGGCCAAACCGAACAAGGTTCTAGGCAATTTGCATGCTTCAATGACCCTACTATGGGGTATTGCACTAGTGATCATGATCTTCAATTACCTACCCTCCGATCTTCATCAAACACAAGGCCTTCTTCTTCTGCTGCTTTTATTAGTCCTACACAAGATTACACTAGTGAGATTGACCTGTGGAACTTTGCTCGATCCACATCATCGTTGTTATCATCATCATCTGAAACAATATGCCACATGTCGAACACGTCAATGTAG 1284 0.426 MPENMSISVNGQSQVPPGFRFHPTEEELLLYYLRKKVSYEKIDLDVIRDVDLNKLEPWDIQEKCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYSNGKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNNINDTTIVSNAMGDGGQEEGWVVCRIFKKKNHLKTLDNPFASSISGEGRRSHLFDSCDDGALEQILQQMGNGTCKEENYEAKNYNNGRYARPFHTGISNNGNYHDNRFMKLPSLESPKSINMESQQNNNNDNNTNNGYHPIIPVDMVTENEGSFTTHQDPNMVHHNPLDASSSMVVGSGGLTNWAALDRLVASQLNGQTEQGSRQFACFNDPTMGYCTSDHDLQLPTLRSSSNTRPSSSAAFISPTQDYTSEIDLWNFARSTSSLLSSSSETICHMSNTSM 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1059 427 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
Lal18g1059 427 Gene3D NAC domain 24 180 IPR036093 GO:0003677|GO:0006355
Lal18g1059 427 ProSiteProfiles NAC domain profile. 15 175 IPR003441 GO:0003677|GO:0006355
Lal18g1059 427 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 8 384 - -
Lal18g1059 427 SUPERFAMILY NAC domain 9 175 IPR036093 GO:0003677|GO:0006355
Lal18g1059 427 PANTHER NAC DOMAIN-CONTAINING PROTEIN 12 8 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1059 Lal-Chr18 13650085 13652552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1059 1 426 NAC Transcription Factor Family AT2G46770 53.211 1.02e-135 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lal18g1059 NAM 1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1059 - - gmx:100793308 619.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1059 18 13650085 13652552 Lal18g1059 18 13650085 13652552 ECH
Lal22g0549 22 3713699 3715941 Lal18g1059 18 13650085 13652552 LSH