Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1057 ATGTCTCAACAAATGCAATTTCAGCTGGTGAGTGGTAACAGTGCAGACCAATATAGTGACACAACATTTACCAAACTCTTTGTTGGAGGGTTAGCTTGGGAGACTCAGAGAGACACAATGAGTAGGTATTTTGAACAGTTTGGAGAAATCTTAGAGGCTGTTGTGATAACAGACAAGAACACTGGAAGATCCAAAGGTTATGGCTTTGTCACATTTAAGGATCCATTGGCAGCCATGAGAGCGTGTCAGAACCCATCTCCAGTTATTGATGGGAGGAGAGCAAATTGCAATTTGGCATCTCTTGGTGCAAACAAGAATAGACCACCACCTTTTCAGCATGGTGCGGGGAGGTTCAGGCCACCACCTGGACTGGTGGCACCACCTACTTATCATGGTTCTTCATCTACATTTTTCCGCCAACCCATTGGGCAATACACATTACCTTATTCAGCTTATGGATATTCTGGATATTCACAAGATACCTTGTATCCCACGGGCTATTATGGAATCTATGGAGGTCAACATTTTTCACCTTACTATCCATCAGGGGCTGCTTCTGGGGCATTAGGGTTGGTCCATAATATGTACCCTTACTATGGTCAATATGCACATACTAACCAAAGTCATGGTTTTGGAGTTCAATACCCTCAAATGGCACAATTGCAAATTTTGCCTCAGCAGCATTATGGTTCTACACGGATTTTATCATTTCCTTCTTCAATTGCATTTCCAACTACTACTAGTGCAGTTTCAGCAACAACAACAACTGCAACTACAACTACAACAGCAATATCTGCATCTGTGGTAGCAACATCAAAATCTTCTGAACAGAATTCTACATCACAAGGATAA 852 0.4202 MSQQMQFQLVSGNSADQYSDTTFTKLFVGGLAWETQRDTMSRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPLAAMRACQNPSPVIDGRRANCNLASLGANKNRPPPFQHGAGRFRPPPGLVAPPTYHGSSSTFFRQPIGQYTLPYSAYGYSGYSQDTLYPTGYYGIYGGQHFSPYYPSGAASGALGLVHNMYPYYGQYAHTNQSHGFGVQYPQMAQLQILPQQHYGSTRILSFPSSIAFPTTTSAVSATTTTATTTTTAISASVVATSKSSEQNSTSQG 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1057 283 PANTHER BOULE-RELATED 1 271 IPR037366 GO:0003729
Lal18g1057 283 Gene3D - 1 115 IPR012677 -
Lal18g1057 283 PANTHER - 1 271 - -
Lal18g1057 283 SUPERFAMILY RNA-binding domain, RBD 10 122 IPR035979 GO:0003676
Lal18g1057 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 83 IPR000504 GO:0003723
Lal18g1057 283 SMART rrm1_1 25 97 IPR000504 GO:0003723
Lal18g1057 283 CDD RRM_RBM24_RBM38_like 24 99 - -
Lal18g1057 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 101 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1057 Lal-Chr18 13619252 13621780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1057 14 100 C2H2 Transcription Factor Family AT2G19380 43.678 1.67e-15 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1057 - - gmx:100786208 421.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0550 22 3735298 3738105 Lal18g1057 18 13619252 13621780 LSH