Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1055 ATGTCAGAACGTGTTGAAACTGATGAGCATGTGGACTATGATGAAGAAAATTATATGGAAGAAACAGACGAAGATGATGAAGAACAAATAGATGACGATGGAGTGGATGGACACAGTGATGAAAATGTTGAAGGGATTGAAGAACATGAACATGAGGACTCAGCGGCTGAGGCCAGTGAGGAAGACCAATTGCTTGAAGCCGATAGAAGTGACATTGCTGCTGAGTCTATAGAACCATCTTTCATTGATGAAGAAGAGAAAAAGAAGCATGATGAACTTCTTGCTCTTCCTCCTCATGGGTCTGAAGTCTTTATTGGTGGACTTCCCCGGGATGTATTTGAAGATGATTTGAGGGAATTGTGCGAGCTGATTGGTGATATTCACGAGGTGCGACTGATGAAAGATAGGGACACTGGAGAAGGAAAGGGTTATGCTTTTGTGGCTTTTAAAACAAAAGAGGTAGCAGAAAAGGCCATCGAAGAGTTACACAACAAGGAGTTTAAGCATAAAACTTTAAGGTGTTCACTATCTGATACAAAACAAAGATTGTTCATTGGTAATGTTCCAAAAAATTGGACTGAGGATGAGTTTAGGAAAGTCGTTGAGGGTGTTGGTCCTGGAGTTGAAAATATCGAGCTCAAAAAGGACCCTCAAAATTCAAGCAAGAATCGTGGGTTTGCTTTTGTTTTATATTACAATAATGCTTGTGCTGATTATTCACGCCAAAAAATGTCAAGTGCGAGTTTCAAGTTTGATGGGAATACCCCAACTGTCTCATGGGCAGATCCAAAGATATCATCTGATCAGTCTGCTTCTGCTCAGGTAAAAGCTCTTTATGTGAAAAACATACCCGAGAATACTAGTACAGAAGAACTGAAAGAACTTTTCTCTCGTCATGGAGAAGTGACAAAAGTGGTCATGCCACCTAGCAAAGCTGGAGGGAAGCGTGATTTTGGTTTCATTCATTATGCTGAGAGATCAACTGCATTAAAAGCTACAAAAGATGGAGAGAAATATGAAATAAATGGCCAAGTGCTAGAGGTTGTTCTTGCGAAGCCTCAAGCTGAGAGAAAATCTGATGGAGGTTATGGCTATAATCCTGGATTTCAACCAAACCACTTTCCATATCCTAATTATGGTGGTGGCTTTGCTGGAAATCTTCATGGCTCTTCAGGAGGTGGATATGGTGCTGCTGGTGGTTTTCAACAGCCAATGATATACGGTCGGGGCCCAATGCCGTCAGGAATGCAGATGGTTCCAATGGTACTACCAGATGGTCAAATTGGCTATGTCCTTCAACAACCGGGTGTACAGATGCCAGCTCCCCGACCACACAGAAATTATCGAAACAATGGTCCAAGTGGTCAGTCAGGACGGACAGGAGAGAATCCCTTACTTGCTTCAATTGGAAAAGCAAGTTATCAAACATGCTCCTATGCTCCTGAAGATTCAAACACTAAATATAAACCTTGTCCCTACATAAGCATCAAAGAACCTGAGAATCAGAACACAATCCAGTTTACAAGTGTTTCTATCACTCACCTTTCAGCTTTCACCGAACTCCTATACCCAGGGTTTTTGCCTCTTGTACTAATTTTAGTGGAAATTAAAATAACAAGGCGTGGAAAGATGCAGCAGACACCGCAAATGGTTCCTGTGATGCCTTCATTCCCTTCTACAAACATAACCACTGAGCAGATTCAAAAGCGGTTAGGATTTGGGTCTTTTGTTTGCAGCACAGAGTCATCACATTTCACTCTATTTCCTAGGAAAGGTGAATTACTTATTAGTAAGATTTGGGTCTTCACCTCTGGAAATGGGAAGGCTGTTGGTTATGCTATAACATTCATGGACATATATCTTGACGAGAACAAGAAGCTGATTCTGGCAATATTGGACAATCAAAATCTTGGAAAACTTGCTGAATGTGCCCAGTATCAAGCTCAGCTTCAAAAGAATTTGATGTATTTAGCAGCAATTGCTGATGCACAACCACAAACACCAACCATGCCTCCCCAGATGGCGCCACACTCCGCGATGCAACAGGGTTTCTATATGCAACATCCTCAGGCTGCAGCAATGGCTCAGCAGCCAGGACTTTTCCCCCAAAAGATGCCATTGCAATTCGGCAATCCACATCAAATGCTGGAGCAGCAGCAGCAGCAGCAGCTACACCAGCAGGCCATCCAAGGACAAATGGGACTCAGACCTGGAGGGCCAAACAACGGCATGCATCCCATGCATAATGATGCAGCGCTTGGAGGTGGCAACAGTGGCGGTCCAAACGATGCACGCAGTGGAAGCAAACAAGATGCTTCTGAGGCTGTGACAGCTGGTGGAGATGGCCAAGGCAACTCAGCCGCCACACATAACAGTGGAGATGGCAAATCATCTTATCCGAAAGGATCAGAAGAGGCAAAGTGA 2424 0.4348 MSERVETDEHVDYDEENYMEETDEDDEEQIDDDGVDGHSDENVEGIEEHEHEDSAAEASEEDQLLEADRSDIAAESIEPSFIDEEEKKKHDELLALPPHGSEVFIGGLPRDVFEDDLRELCELIGDIHEVRLMKDRDTGEGKGYAFVAFKTKEVAEKAIEELHNKEFKHKTLRCSLSDTKQRLFIGNVPKNWTEDEFRKVVEGVGPGVENIELKKDPQNSSKNRGFAFVLYYNNACADYSRQKMSSASFKFDGNTPTVSWADPKISSDQSASAQVKALYVKNIPENTSTEELKELFSRHGEVTKVVMPPSKAGGKRDFGFIHYAERSTALKATKDGEKYEINGQVLEVVLAKPQAERKSDGGYGYNPGFQPNHFPYPNYGGGFAGNLHGSSGGGYGAAGGFQQPMIYGRGPMPSGMQMVPMVLPDGQIGYVLQQPGVQMPAPRPHRNYRNNGPSGQSGRTGENPLLASIGKASYQTCSYAPEDSNTKYKPCPYISIKEPENQNTIQFTSVSITHLSAFTELLYPGFLPLVLILVEIKITRRGKMQQTPQMVPVMPSFPSTNITTEQIQKRLGFGSFVCSTESSHFTLFPRKGELLISKIWVFTSGNGKAVGYAITFMDIYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQTPTMPPQMAPHSAMQQGFYMQHPQAAAMAQQPGLFPQKMPLQFGNPHQMLEQQQQQQLHQQAIQGQMGLRPGGPNNGMHPMHNDAALGGGNSGGPNDARSGSKQDASEAVTAGGDGQGNSAATHNSGDGKSSYPKGSEEAK 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1055 807 MobiDBLite consensus disorder prediction 439 463 - -
Lal18g1055 807 MobiDBLite consensus disorder prediction 1 72 - -
Lal18g1055 807 MobiDBLite consensus disorder prediction 715 807 - -
Lal18g1055 807 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q 2 463 - -
Lal18g1055 807 CDD RRM3_hnRNPR_like 275 353 - -
Lal18g1055 807 SUPERFAMILY RNA-binding domain, RBD 272 381 IPR035979 GO:0003676
Lal18g1055 807 MobiDBLite consensus disorder prediction 9 38 - -
Lal18g1055 807 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 276 353 IPR000504 GO:0003723
Lal18g1055 807 Gene3D - 5 181 IPR012677 -
Lal18g1055 807 MobiDBLite consensus disorder prediction 761 798 - -
Lal18g1055 807 Pfam SSXT protein (N-terminal region) 621 667 IPR007726 -
Lal18g1055 807 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 181 263 IPR000504 GO:0003723
Lal18g1055 807 MobiDBLite consensus disorder prediction 39 72 - -
Lal18g1055 807 SMART rrm1_1 102 175 IPR000504 GO:0003723
Lal18g1055 807 SMART rrm1_1 182 259 IPR000504 GO:0003723
Lal18g1055 807 SMART rrm1_1 277 349 IPR000504 GO:0003723
Lal18g1055 807 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 179 IPR000504 GO:0003723
Lal18g1055 807 MobiDBLite consensus disorder prediction 449 463 - -
Lal18g1055 807 PANTHER GEO13361P1-RELATED 2 463 - -
Lal18g1055 807 MobiDBLite consensus disorder prediction 715 730 - -
Lal18g1055 807 SUPERFAMILY RNA-binding domain, RBD 98 264 IPR035979 GO:0003676
Lal18g1055 807 Gene3D - 264 400 IPR012677 -
Lal18g1055 807 CDD RRM_SF 103 175 - -
Lal18g1055 807 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 173 IPR000504 GO:0003723
Lal18g1055 807 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 278 346 IPR000504 GO:0003723
Lal18g1055 807 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 183 249 IPR000504 GO:0003723
Lal18g1055 807 Gene3D - 182 262 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1055 Lal-Chr18 13576972 13586443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1055 103 453 Eukaryotic Initiation Factors Gene Family AT2G23350 25.515 3.67e-18 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1055 K13161 - gmx:100790907 676.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1055 18 13576972 13586443 Lal18g1055 18 13576972 13586443 ECH
Lal6g0613 6 3949360 3953998 Lal18g1055 18 13576972 13586443 LSH
Lal22g0555 22 3769700 3773921 Lal18g1055 18 13576972 13586443 LSH