Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1054 ATGGAAGATTTGATCACATCCTCTTCTTCCTCCTCCTTAGTCTCACTCCACAAAGAAAACCCACCAACCCTTCAACAAAAGCTTCAAGTTTTAGTTGAGAGCCAACACGATTGGTGGGTCTATGCCATTTTTTGGCAAACCAAAAACGATGACAATGGCAACCTTTACTTATCTTGGGGAGAAGGCTATTTCCAAGGCACCAAAGAAATTACTCCAATACTACAACAACTTGATCAAAATGATGCTGAATGGTTCTATATCATGTCATTGACTCAAACCTTTTCCATAACCAATGCTTCTTCACCTTCATCTTCATCTTCACCATCCTCTTTACCCGGAAAATCGTTCGCTTTAGGCTCAGTGCTTTGGCTAGATAGCAAGCACGAGCTTCAATATTACAATTGTGAGAGAACAAAAGAGGCTCATATGCACGGAATTGAAACATTAACTTGCATCCCAACAACCAACGGGGTCATCGAATTAGGTTCCTACGACACTGTTAAACAAAATTGGGGTCTTGTCCAACATGTCAAATCTCTCTTTGGATCATTATCACCCGATCTTAAGGACAATGACAACAACAACAACAATCACCTTAACCCGACACAAAAACAATTCTTTGATGACAAAAACTTCTCCTTCGCCGACATAGGAATACTCACAAGTGTTGATGAAAATGAAGACACTATGGAGAGAAATACACAAGAACAATCCAACAACAAGATCAGCATTCAATCGTCTTATGTTGATTCTGAGAATTCAGATTCTGATAATTGTCCAATATTGGCAACGGAAAACATGTCAGAGAAGGATAAATATTTATTATTGCCAAAGAAGAGAGGGAGAAAACCAAAGTTAGGGCACAAAACACAGGTGAATCACGTGGAGGCAGAGAGACAAAGGAGAGAGAAACTGAACCATCGATTCTATGCGTTGAGAGCGGTGGTGCCAAATGTTTCAAAAATGGATAAAGCTTCTCTTTTATCTGATGCTGTTTCTTTCATCAACGAGCTCAAAACAAAGATCAATGAGTTGGAAAAGGATGTGTGTAGCAACAATAAGAATGTGAAATTAGAAATGGGAGATAGAATGGAGAATAATAGGATTAGGGCGCTTACAAGTTCAAGTGTTGTGGATCAAAGAGGGCCTAATAATGTTGAAGTTGATGTGAAGGTGGTAGGGAATGATGCAATGGTGAGGGTTCAAATGGAGAAAGTGAACCACCCAGGGGCAAGGTTAATGGGTGTGTTAAGGGACTTGAATTTTCAGGTACATCATGCTAGCATGTCTTGTGTTAATGATGTTATGCTTCAAGATGTTTTTATTAAAACTCCAAATAAGATGAGAAGTGAAGAGGATCTTAAGTCAGCAATTCTGATGAGATTAGTCACACACTCACACTCATCTCTGCAGGGTAGCTAA 1422 0.3945 MEDLITSSSSSSLVSLHKENPPTLQQKLQVLVESQHDWWVYAIFWQTKNDDNGNLYLSWGEGYFQGTKEITPILQQLDQNDAEWFYIMSLTQTFSITNASSPSSSSSPSSLPGKSFALGSVLWLDSKHELQYYNCERTKEAHMHGIETLTCIPTTNGVIELGSYDTVKQNWGLVQHVKSLFGSLSPDLKDNDNNNNNHLNPTQKQFFDDKNFSFADIGILTSVDENEDTMERNTQEQSNNKISIQSSYVDSENSDSDNCPILATENMSEKDKYLLLPKKRGRKPKLGHKTQVNHVEAERQRREKLNHRFYALRAVVPNVSKMDKASLLSDAVSFINELKTKINELEKDVCSNNKNVKLEMGDRMENNRIRALTSSSVVDQRGPNNVEVDVKVVGNDAMVRVQMEKVNHPGARLMGVLRDLNFQVHHASMSCVNDVMLQDVFIKTPNKMRSEEDLKSAILMRLVTHSHSSLQGS 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1054 473 Gene3D - 284 355 IPR036638 GO:0046983
Lal18g1054 473 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 289 349 IPR036638 GO:0046983
Lal18g1054 473 PANTHER MYC 1 462 IPR045084 GO:0003700|GO:0006355
Lal18g1054 473 PANTHER TRANSCRIPTION FACTOR BHLH14 1 462 - -
Lal18g1054 473 Pfam Helix-loop-helix DNA-binding domain 292 338 IPR011598 GO:0046983
Lal18g1054 473 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 289 338 IPR011598 GO:0046983
Lal18g1054 473 Coils Coil 328 348 - -
Lal18g1054 473 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 24 181 IPR025610 -
Lal18g1054 473 SMART finulus 295 344 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1054 Lal-Chr18 13572099 13573520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1054 20 462 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G17880 33.091 3.05e-84 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal18g1054 bHLH-MYC_N 5.7e-41 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1054 - K13422 lang:109359482 616.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1054 18 13572099 13573520 Lal18g1054 18 13572099 13573520 ECH
Lal22g0557 22 3783900 3785330 Lal18g1054 18 13572099 13573520 LSH