Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1051 ATGTTAGATCATATGGAATATACTTACACAGCTGAAGCTACTGCCGAGGCAGAAACTTATAGCAGCACAAATCCATCATCATCAGCCATGACAAAGAAGAAAAACAAAAAAAAGAGGTTCAGTGATGAACAAATAAAGTCACTGGAATCTATGTTTGAGACAGAGTCAAGACTAGAACCTAGAAAGAAGTTGCAGTTGGCAACAGAGCTTGGGTTGCAGCCAAAACAAGTTGCTATATGGTTTCAGAACAGAAGAGCTAGGTGGAAATCAAAGCAACTTGACAGAGACTATAACATACTTAGATCCAATTATGATAATTTGGCTTCAAATTTTGAAGCCCTGAAGAAGGAAAAGCAAGCATTACTAGTACAGTTGCAGAAGCTGAATGATATAATTGATAAGCGTAAGCCACAGGAGCAAGTTCAAAGTTCTAGTTCTAAACAAGTTAAAGCAGCAAACAGCATGGTCAGTGAACCAGAAAATGGAGACACAAGCATAAAGGTAGAACACTTTGGCATTGAAGATGAACCTGGCCTTTTCAATTTTGTTGAACATGCTGAAGGTTCTTTAACCTCACCAGAAGAATTGACTACCTTTGACTCTGATGATCTCTTAGCCCAATCAACAAGTGATTTTCAATGGTGGGATTTCTGGTCTTGA 660 0.3848 MLDHMEYTYTAEATAEAETYSSTNPSSSAMTKKKNKKKRFSDEQIKSLESMFETESRLEPRKKLQLATELGLQPKQVAIWFQNRRARWKSKQLDRDYNILRSNYDNLASNFEALKKEKQALLVQLQKLNDIIDKRKPQEQVQSSSSKQVKAANSMVSEPENGDTSIKVEHFGIEDEPGLFNFVEHAEGSLTSPEELTTFDSDDLLAQSTSDFQWWDFWS 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1051 219 MobiDBLite consensus disorder prediction 136 162 - -
Lal18g1051 219 Coils Coil 97 131 - -
Lal18g1051 219 Pfam Homeodomain 34 89 IPR001356 GO:0003677
Lal18g1051 219 Gene3D - 26 98 - -
Lal18g1051 219 MobiDBLite consensus disorder prediction 13 40 - -
Lal18g1051 219 Pfam Homeobox associated leucine zipper 91 130 IPR003106 GO:0006355|GO:0043565
Lal18g1051 219 PRINTS Lambda-repressor HTH signature 62 71 IPR000047 GO:0003677
Lal18g1051 219 PRINTS Lambda-repressor HTH signature 71 87 IPR000047 GO:0003677
Lal18g1051 219 SMART HOX_1 33 95 IPR001356 GO:0003677
Lal18g1051 219 MobiDBLite consensus disorder prediction 138 161 - -
Lal18g1051 219 CDD homeodomain 39 92 IPR001356 GO:0003677
Lal18g1051 219 ProSitePatterns 'Homeobox' domain signature. 66 89 IPR017970 GO:0000981|GO:0006355
Lal18g1051 219 ProSiteProfiles 'Homeobox' domain profile. 31 91 IPR001356 GO:0003677
Lal18g1051 219 SUPERFAMILY Homeodomain-like 18 93 IPR009057 -
Lal18g1051 219 MobiDBLite consensus disorder prediction 14 30 - -
Lal18g1051 219 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-7 15 219 - -
Lal18g1051 219 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 15 219 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1051 Lal-Chr18 13528718 13529878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1051 34 219 Homeobox Transcription Factor Family AT2G46680 48.472 2.43e-59 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lal18g1051 Homeodomain 2.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1051 K09338 - gmx:100797862 256.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1051 18 13528718 13529878 Lal4g0524 4 3794807 3796279 ECH
Lal18g1051 18 13528718 13529878 Lal21g0585 21 4362503 4364931 ECH
Lal18g1051 18 13528718 13529878 Lal18g1051 18 13528718 13529878 ECH
Lal6g0617 6 3981737 3983435 Lal18g1051 18 13528718 13529878 LSH
Lal22g0559 22 3812809 3814709 Lal18g1051 18 13528718 13529878 LSH