Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1048 ATGGGTTTCATCCGGTGTATGTTTCTAATTTCTGAAGCATCTGATTCACAGGGTGCTGTTGAGAGTTTACTAGAGCGTAGTTCATATGTGAAACTTGCTGATGAATCCCTGGTTCCAATAGATGAGCAATGCAGGGAACTACTACTTCAAAGACTCCTAGATATGAGTTCAAAGGGATTGCGTTGCTTGGGTATGGCATATAAGGATGAATTGGGTGAATTTTCAGATTATGATGCAGATACTCATCCTGCCCATAAGAAGTTGCTTGATCCAGCATGCTACTCATTAATTGAAAGTGGCCTAGTTTTTGTTGGTGTTGTTGGTATAAGAGACCCTCCGCGTCAGGAAGTTCATAAAGCAATTAAGGATTGCAAGAAAGCTGGTATTAGAGTTATGGTAATTACTGGAAATAATAAGTCAACAGCAGAGGCTATTTGTCGCGAGATCAAATTGTTCTCTAAAGATGAGGATCTCACATCGAAAAGTCTGACAGGTAAGGAATTCATATCTCTTTCTCATTCAGAAAAAGTTCAAATGTTGTCAAGACCTGGAGGCAAGGTTTTCTCTCGAGCTGAGCCTAGACACAAGCAAGACATTGTGAGGCTACTAAAAGATCTTGGGGAGATTGTTGCAATGACCGGAGATGGTGTGAATGATGCACCTGCACTTAAGCTTGCTGACATAGGTATTGCAATGGGCATAACTGGAACAGAGGTTGCAAAAGAAGCTTCAGATATGGTGCTTGCAGATGACAATTTTAGTACCATTGTTTCAGCTATTGCCGAGGGTCGCTCTATTTACAATAACATGAAAGCTTTTATCAGGTACATGATATCATCAAATGTTGGAGAAGTAATATCCATATTCTTAACTGCTGCTCTGGGTATCCCTGAATGCATGATACCAGTACAACTTCTGTGGGTGAATTTGGTTACTGATGGTCCACCTGCAACAGCTCTTGGTTTTAACCCTGCTGATGTTGATATCATGCAGAAACCACCTCGCAGAAGTGACGATGCGCTCATAAGTTCTTGGGTTCTTCTCCGTTATCTAATCATTAGTTCCTATGTGGGAATTGCAACAGTTGGAATTTTTGTTTTGTGGTACACCCAAGCATCTTTTCTAGGCATCAATCTTGTGAGTGATGGGCACACAATTATAGAACTGTCGCAGCTTCGCAACTGGGGGGAATGTCATTCATGGTCTAATTTTACCGTTGCTCCATATTCGGTTGGTAACCGTCGCGTGATCACATTTTCAAATCCTTGTGACTATTTTTCAGTTGGCAAAGTTAAGGCCATGACTCTGTCTCTCACTGTATTGGTAGCAATTGAAATGTTTAATTCATTGAATGCACTCTCAGAAGATAATAGCTTGAGAACCTTACCACCTTGGAGGAACCCTTGGCTTTTGTTAGGCATGTCAATATCATTGGGACTACACTGTGTCATACTCTACATTCCACTCCTCAGTGATGTGTTTGGTGTTGTTCCACTTAGTTTGAAGGAATGGTTTATGGTTATACTTATATCAGTACCTGTCATTTTCATTGATGAAATTCTAAAATTTGTGGTAAGGAGTCAAAGGAAGATGAGAAAGGAGAAAGCAGCATGA 1614 0.4064 MGFIRCMFLISEASDSQGAVESLLERSSYVKLADESLVPIDEQCRELLLQRLLDMSSKGLRCLGMAYKDELGEFSDYDADTHPAHKKLLDPACYSLIESGLVFVGVVGIRDPPRQEVHKAIKDCKKAGIRVMVITGNNKSTAEAICREIKLFSKDEDLTSKSLTGKEFISLSHSEKVQMLSRPGGKVFSRAEPRHKQDIVRLLKDLGEIVAMTGDGVNDAPALKLADIGIAMGITGTEVAKEASDMVLADDNFSTIVSAIAEGRSIYNNMKAFIRYMISSNVGEVISIFLTAALGIPECMIPVQLLWVNLVTDGPPATALGFNPADVDIMQKPPRRSDDALISSWVLLRYLIISSYVGIATVGIFVLWYTQASFLGINLVSDGHTIIELSQLRNWGECHSWSNFTVAPYSVGNRRVITFSNPCDYFSVGKVKAMTLSLTVLVAIEMFNSLNALSEDNSLRTLPPWRNPWLLLGMSISLGLHCVILYIPLLSDVFGVVPLSLKEWFMVILISVPVIFIDEILKFVVRSQRKMRKEKAA 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1048 537 SUPERFAMILY HAD-like 46 317 IPR036412 -
Lal18g1048 537 Gene3D - 113 258 IPR023214 -
Lal18g1048 537 Pfam haloacid dehalogenase-like hydrolase 104 227 - -
Lal18g1048 537 Pfam Cation transporting ATPase, C-terminus 298 524 IPR006068 -
Lal18g1048 537 PRINTS P-type cation-transporting ATPase superfamily signature 105 116 - -
Lal18g1048 537 PRINTS P-type cation-transporting ATPase superfamily signature 127 137 - -
Lal18g1048 537 PRINTS P-type cation-transporting ATPase superfamily signature 213 232 - -
Lal18g1048 537 PRINTS P-type cation-transporting ATPase superfamily signature 237 249 - -
Lal18g1048 537 Gene3D - 17 112 IPR023299 GO:0000166
Lal18g1048 537 PANTHER CALCIUM-TRANSPORTING ATPASE 2, ENDOPLASMIC RETICULUM-TYPE 17 530 - -
Lal18g1048 537 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 186 298 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal18g1048 537 SUPERFAMILY Calcium ATPase, transmembrane domain M 55 529 IPR023298 -
Lal18g1048 537 Gene3D - 259 526 - -
Lal18g1048 537 PANTHER CALCIUM-TRANSPORTING ATPASE 17 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1048 Lal-Chr18 13472872 13478109 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1048 17 535 Primary Pumps ATPases(2) AT4G00900 76.245 0.0 846
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1048 K01537 - gmx:100800498 889.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1048 18 13472872 13478109 Lal18g1048 18 13472872 13478109 ECH