Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1046 ATGGATTCTGGAACTGTTTTGGCATTGCTTTCTGAAGGAAATGAATGCCAAACAAGGGATCCTCATGATTTTGAGGAAGACTTTGTAGAGAAAGATCCAACTGGCCGGTACCTAAGGTACAACGAAATTTTGGGAAGGGGTGCCTTCAAGACCGTTTATAGGGGCTTTGATGAAGTTGATGGAATAGAAGTTGCTTGGAACCAAATTAAGGTTGAAGGCCTCTTGCACTCAGTAGATGATCTTTCAAAGTTGTATACTGAAGTTCATCTGTTGAAGTCTTTGAAACATGAAAATATCATCAAGTTCTATGATTCTTGGGTTGACGATAAGGAAAAAACTGTTAACTTGATTACTGAACTTTTCACATCTGGAAATTTGAGGCAATACCGTAAGAAGCATAAATATGTTGAAATGAAAGCCATAAAATGTTGGGCTAGGCAGATTCTTCAAGGCCTTGCATATCTTCACAGTCACAAGCCACCTATTATTCACAGAGACTTGAAATGCGACAACATCTTTGTGAACGGAAACCAAGGAGAAGTTAAAATAGGAGACCTTGGTTTAGCAATTGTCATGCAGCAGCCAACTGCTCGGAGTGTTATTGGGACTCCTGAGTTTATGGCTCCAGAATTATACGAAGAGGAATACAACGAACTTGTTGACGTCTATTCTTTTGGGATGTGCATGTTGGAGATGGTTACTCTTGAGTATCCTTATAGTGAATGCAAAAATCCAGCTCAAATTTATAAGAAAGTTACCTCGGGCATCAAACCTGCCTTCCTTAATAAGGTGAGTGACCCCCAAATTAAGGAGTTTATTGAGAAATGTCTGGTTCCAGTATCTGAGAGACTTTCTGCAGAAGAGCTTCTTCGAGATCCATTTCTACAAAGGGAGAATCCAAAGGATCCAATCCTTTATCCTTTACCATCATTTGCTAAAAATCCAAAAGCTATAGATCTGTCCAAGTCTGGTTCTCTATCTATGGACATAGATGCTGATTACAAGCAGAGTTCTCTGAGTACCTATGCTGAAAGCAACCAGGGAAGTCCAAATTTTCCTGTTTTTCAAGTCCAAAGGGCTAATAAGAACAATGAGTTTAGGTTGCAAGGGACTAAAAATGATGATAACTCAGTATCATTGTACTTGCGCATTGCTGATACAACTGGTCGGGTAAGGAATATACATTTTCTCTTTTACCTTGATTCAGATACTGCAGATTCTGTGGCCTCAGAGATGGTTGAACATTTGGAACTGGCAGATCATGATGTAGTCTTCATAGCTGAGCTTATTGATTACTTGATAATAAGACTTCTGCCTTGGTGGAAGCCCTCGTGTAATCATTCCTCTCGTGGGTCTCAAAATGTTGATGGTCAAACCTTAATGGCATGCCCCTGGGGTCCTGTCCTAACTAATGTCCCTTCTGATTTGTCTATTGGTAAAGATGGCTCCGATGGGTCTAATACAACTCCGAGAGAAGATTTGTCTAATACAATACCCGGAGAAGGTTTTGTGATAAATGGGATGAGTAGCTTTATAAAAGATGCTGACAATGATACATGCGAGGGCAATTATAATTCTTCTCCTAGTTTGATTAACTTGGAAGATGAATATTCACAAGGATCTGGAACTTCTGAGATAGTTGCTATAGACGCTTCATTAAAAAATGAGAGCTATCTTGATTACGTTCATGGAAGCCTTGAAGGCTGTAATAGGTTCATCTCTGAACTTGAGGTTGCGGATAGATTTTTCGAGGACTGTAAGCTGCAGGCAACAACTTACTGTGATGAATACTCAAAAAACTTGGGGTCAACTTGTGGGGCATCGTATGCTGTGAGTTTGACAAGTAGCTGTTCTTATATGTCTTTAACTGAAGAAGACATTGATCTTGAGCTGAAGTTAGAAATTGAAGCAATTGAGTCACACTATCAGCGTTGGATCGATGAACTTACTAGAATGAAGTTGGATGCATTGGAAGCTGCTAAAAGGAGATGGATGGCCAAAAAGAAAGTGACTGTTCATTGA 2022 0.3971 MDSGTVLALLSEGNECQTRDPHDFEEDFVEKDPTGRYLRYNEILGRGAFKTVYRGFDEVDGIEVAWNQIKVEGLLHSVDDLSKLYTEVHLLKSLKHENIIKFYDSWVDDKEKTVNLITELFTSGNLRQYRKKHKYVEMKAIKCWARQILQGLAYLHSHKPPIIHRDLKCDNIFVNGNQGEVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYEEEYNELVDVYSFGMCMLEMVTLEYPYSECKNPAQIYKKVTSGIKPAFLNKVSDPQIKEFIEKCLVPVSERLSAEELLRDPFLQRENPKDPILYPLPSFAKNPKAIDLSKSGSLSMDIDADYKQSSLSTYAESNQGSPNFPVFQVQRANKNNEFRLQGTKNDDNSVSLYLRIADTTGRVRNIHFLFYLDSDTADSVASEMVEHLELADHDVVFIAELIDYLIIRLLPWWKPSCNHSSRGSQNVDGQTLMACPWGPVLTNVPSDLSIGKDGSDGSNTTPREDLSNTIPGEGFVINGMSSFIKDADNDTCEGNYNSSPSLINLEDEYSQGSGTSEIVAIDASLKNESYLDYVHGSLEGCNRFISELEVADRFFEDCKLQATTYCDEYSKNLGSTCGASYAVSLTSSCSYMSLTEEDIDLELKLEIEAIESHYQRWIDELTRMKLDALEAAKRRWMAKKKVTVH 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1046 673 Gene3D Phosphorylase Kinase; domain 1 22 119 - -
Lal18g1046 673 Gene3D - 376 461 - -
Lal18g1046 673 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 379 433 IPR024678 GO:0004674|GO:0005524
Lal18g1046 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Lal18g1046 673 Gene3D Transferase(Phosphotransferase) domain 1 121 301 - -
Lal18g1046 673 SMART serkin_6 38 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal18g1046 673 SUPERFAMILY Protein kinase-like (PK-like) 39 349 IPR011009 -
Lal18g1046 673 MobiDBLite consensus disorder prediction 476 497 - -
Lal18g1046 673 PANTHER KINASE DOMAIN PROTEIN 4 673 - -
Lal18g1046 673 CDD STKc_WNK 36 295 - -
Lal18g1046 673 ProSiteProfiles Protein kinase domain profile. 38 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal18g1046 673 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 4 673 - -
Lal18g1046 673 Pfam Protein kinase domain 41 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal18g1046 673 MobiDBLite consensus disorder prediction 476 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1046 Lal-Chr18 13460140 13464781 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1046 610 673 MAP Kinase Kinase Kinase AT5G41990 34.375 8.77e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Lal18g1046 Pkinase 1.8e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1046 K08867 - gmx:100272197 927.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1046 18 13460140 13464781 Lal18g1046 18 13460140 13464781 ECH