Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1040 ATGGAGCAGCAGCAACAACCACTCCGCGCCGCCGCCGAAGATGACGTAACAACTACCACGACAAAACCAGACAACTCAAGCGGCGGTTCCACGCGCCACCCGGTCTACCGTGGCGTCCGGAAACGGCGGTGGGGCAAATGGGTATCTGAAATTCGGGAACCACGCAAGAAGTCACGTATATGGCTTGGCTCCTTCCCGGTGCCGGAGATGGCGGCCAAGGCCTATGACGTCGCTGCTTACTGCCTGAAAGGTCGGACGGCGCAGCTCAATTTCCCGGACGAGGTACACCACCTGCCGCCCTTGCCACCGGCATCTGTATGCACGGCGAGGGAAATCCAAGCGGCAGCGGCCAAAGCGGCTCACATGATGATGAAGGCTACCAATTCTCCAGAGAAGAGTGGCATTGCTTCTTCTTCATCCGGTGACGGAAATAGCGGCGGCGTCGATGACTTTTGGGCTGAGATAGAGCTGCCGGAGCTCATGAATAGCAAGTGGTGGACTCTTTTCAATAATTAA 516 0.5717 MEQQQQPLRAAAEDDVTTTTTKPDNSSGGSTRHPVYRGVRKRRWGKWVSEIREPRKKSRIWLGSFPVPEMAAKAYDVAAYCLKGRTAQLNFPDEVHHLPPLPPASVCTAREIQAAAAKAAHMMMKATNSPEKSGIASSSSGDGNSGGVDDFWAEIELPELMNSKWWTLFNN 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1040 171 CDD AP2 36 93 IPR001471 GO:0003700|GO:0006355
Lal18g1040 171 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 4 167 - -
Lal18g1040 171 ProSiteProfiles AP2/ERF domain profile. 35 92 IPR001471 GO:0003700|GO:0006355
Lal18g1040 171 SUPERFAMILY DNA-binding domain 35 94 IPR016177 GO:0003677
Lal18g1040 171 MobiDBLite consensus disorder prediction 1 37 - -
Lal18g1040 171 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 4 167 - -
Lal18g1040 171 MobiDBLite consensus disorder prediction 1 32 - -
Lal18g1040 171 SMART rav1_2 35 98 IPR001471 GO:0003700|GO:0006355
Lal18g1040 171 Pfam AP2 domain 34 84 IPR001471 GO:0003700|GO:0006355
Lal18g1040 171 Gene3D AP2/ERF domain 35 93 IPR036955 GO:0003700|GO:0006355
Lal18g1040 171 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700|GO:0006355
Lal18g1040 171 PRINTS Ethylene responsive element binding protein signature 74 94 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1040 Lal-Chr18 13410282 13410797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1040 26 163 AP2-EREBP Transcription Factor Family AT1G01250 63.830 1.58e-50 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal18g1040 AP2 1.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1040 K09286 - gmx:100802845 217.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1040 18 13410282 13410797 Lal18g1040 18 13410282 13410797 ECH
Lal6g0633 6 4121349 4121891 Lal18g1040 18 13410282 13410797 LSH
Lal22g0572 22 3917485 3917997 Lal18g1040 18 13410282 13410797 LSH
Lal3g1548 3 21238981 21239532 Lal18g1040 18 13410282 13410797 PCT
Lal18g1040 18 13410282 13410797 Lal3g1548 3 21238981 21239532 PCT