Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1039 ATGCTTCTCCTTGAATTTAAGCTTAAATGGAAGAGGGGAAGAGCTTTTTTGATTGGCGGGATTGAGATGGGCTTAGGAGGTGGTGGGTTATGGAATGATGAAGAAAAATCCATGGTGGTTAAGGTTCTAGGGACTCATGCTTTTGATTATTTGTTTACCAACTCTTTTTCAAATGAAAATCTGTTAATGACAATAGGAAGTGGTGAGAATCTGCAAAGCAAGCTCTCAGATCTTGTAGAACTCCCCAACATGTCAAATTTCAGCTGGAACTATGCAATTTTCTGGCAACTTTCACAGTCCAAATATGGAGACTTGGTTCTTGGTTGGGGTGATGGGTGTTGCAGGGAACCCAATGAAGGAGAAGGTGGCAGTGATGGTGGAGTTAGAGGTATTCTGAGCCTTGGCATGAATGATGAGATGCAACAAAAGATAAGGAAGAGAGTGCTTCAGAAGCTGCACACAACTTTTGGTGATTCAGATGAAGACCACTATGCTTTTGGATTAGACCGTGTAACTGACACAGAGATGTTCTTTCTTGTGTCCATGTACTTCTCCTTCCCTCGTGGACATGGTGGTCCAGGTAAGTGCTTTGCATCAGGGAAACCCTTGTGGCTCATTGATGTGATGAAATCTAGTTCTGATGATTACTGTGTGAGATCTTTCTTGGCTAAATCAGCTGGAATTCAGACTATTGTTTTGGTACCTACTGATTTGGGTGTTTTGGAGTTAGGTTCTGTTAGGATAGTGAAGGAAAACTTTGATTTGTTGCATGCTGTGAAATCTTTGTTTTCAGCTCCATCATCATTCCCTGTGGTTAGTAAGCCAATTTCACCGGTTAATGTCGTGAACTCTGAGAAAAGAGATGAGAGTGCCCTTTTTCCTGGTTTAGGAATTGGGGATAGTAACAAAAGCAAGAGAACCAATAAAGTAGAGGCAAATGGAGCTCCAAAAGTTTTTGGGCAGGATTTGAACACTTTGAATTTGAGTCATACTACTCATTTCAGGGAGAAACTTGCTGTTAGGAAAATGGAGAGGCCTCCTTGGAGAGGTCACCCCAATGGGAACAGAAGCATCGGCTTTCCGAATGCGCGAAATGGTATTCATGGTTCAAATTGGGGAGCTAGTACTCAAAGTGTGAGGCCGCCACCTAGCCCTGTGGAAACTCCTAGGTCTTCCACAAGCAATGTACCGGAGTTGGCAAATGGTGCAATACATGATTTCATACTTAACAACTATCTTCCACCGCAACGGCTGGGGCAAATGCAAATTGATTTCTCAGGCGCCACTTCAAGGCCTAATGTGATTGCTGAATCTGAGCTTTCTGATGTTGAGGCGTCGTGCAAGGAGGGAAAACCGAGTACAGCTGATGAGAGGAAGCCTAGGAAGCGAGGGAGGAAGCCTGCCAATGGAAGGGAAGAACCCCTGAATCATGTGGAAGCAGAGAGACAAAGGCGCGAGAAGCTGAACCAGCGGTTCTATGCGTTACGAGCTGTTGTACCAAATATTTCCAAGATGGATAAGGCGTCTCTTTTGGGAGATGCTATTGCTTACATCAATGAGCTTCAGGCAAAACTCAAGATTATGGAATCTCAAAGAGGAGATAGGTTTGGAAGCACATCCAGGGATAAATCAGCATCGGAGCCAGCCAACTCAAGAACAGAAACTCGTGACGTGGATATTGAAACTGTTCAAGATGGAGTCATTGTAAAGGTGAGCTGCTCTATTCATGATCACCCTGTATCAAAAGTGATCCAGGCATTCAAAGAAGCAGAAATCAGCGTTGTAGAATCAAAGCTCGCAGCTTCGAATGATACTGTCTTACATACATTTGTGATCAAGTCGCGAAGACCTGAGCTGCTTACAAAGGAGAAGTTGATTGCAGTGTTTTCTGGAGAATCCAACTCCTGA 1908 0.4387 MLLLEFKLKWKRGRAFLIGGIEMGLGGGGLWNDEEKSMVVKVLGTHAFDYLFTNSFSNENLLMTIGSGENLQSKLSDLVELPNMSNFSWNYAIFWQLSQSKYGDLVLGWGDGCCREPNEGEGGSDGGVRGILSLGMNDEMQQKIRKRVLQKLHTTFGDSDEDHYAFGLDRVTDTEMFFLVSMYFSFPRGHGGPGKCFASGKPLWLIDVMKSSSDDYCVRSFLAKSAGIQTIVLVPTDLGVLELGSVRIVKENFDLLHAVKSLFSAPSSFPVVSKPISPVNVVNSEKRDESALFPGLGIGDSNKSKRTNKVEANGAPKVFGQDLNTLNLSHTTHFREKLAVRKMERPPWRGHPNGNRSIGFPNARNGIHGSNWGASTQSVRPPPSPVETPRSSTSNVPELANGAIHDFILNNYLPPQRLGQMQIDFSGATSRPNVIAESELSDVEASCKEGKPSTADERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKIMESQRGDRFGSTSRDKSASEPANSRTETRDVDIETVQDGVIVKVSCSIHDHPVSKVIQAFKEAEISVVESKLAASNDTVLHTFVIKSRRPELLTKEKLIAVFSGESNS 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1039 635 Gene3D - 465 534 IPR036638 GO:0046983
Lal18g1039 635 MobiDBLite consensus disorder prediction 532 557 - -
Lal18g1039 635 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 472 521 IPR011598 GO:0046983
Lal18g1039 635 MobiDBLite consensus disorder prediction 439 483 - -
Lal18g1039 635 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 475 533 IPR036638 GO:0046983
Lal18g1039 635 MobiDBLite consensus disorder prediction 442 483 - -
Lal18g1039 635 SMART finulus 478 527 IPR011598 GO:0046983
Lal18g1039 635 CDD bHLH_AtAIB_like 469 532 - -
Lal18g1039 635 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 71 263 IPR025610 -
Lal18g1039 635 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 26 633 - -
Lal18g1039 635 PANTHER MYC 26 633 IPR045084 GO:0003700|GO:0006355
Lal18g1039 635 MobiDBLite consensus disorder prediction 345 396 - -
Lal18g1039 635 Pfam Helix-loop-helix DNA-binding domain 476 522 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1039 Lal-Chr18 13383912 13386162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1039 27 632 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 50.475 0.0 547
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal18g1039 bHLH-MYC_N 5.1e-51 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1039 - - lang:109336709 1120.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1039 18 13383912 13386162 Lal18g1039 18 13383912 13386162 ECH
Lal6g0634 6 4133429 4135727 Lal18g1039 18 13383912 13386162 LSH
Lal3g1549 3 21251299 21253033 Lal18g1039 18 13383912 13386162 PCT
Lal18g1039 18 13383912 13386162 Lal3g1549 3 21251299 21253033 PCT