Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1033 ATGAAGCCTCTTTCTTCTCGTATTCCACATCCCTCTTTCTCTTCTACCCTTTTCCCTTTCAAGCCCAAACATCGACGACCCTCTTCCAAGAAAAAGGCTCAACTCATCAGCGACTCGGTTACCGAGTTAAGAACCGATTCTTATCCCGTTTCAATCAAGAGCGATGAATTTCTCACCGAACAGGATGAAGATGAAGATGAAGATGGTGAGAGTGAAGGTATAAGTGAGAAAAATGATGAGAAATTGAATAAGAGTAAAACTGTTTTGTTTGTAAATGAGAAACCAACTCCAATTGCTTCTGTATCTGAGCCTTCTGATTCTCATTTGAGTCACACTAGATTCGACCAATGTTCAGTCTCCCAACTGTCATTAAAAGCAGTGAAGGATGCTGGGTATGAGAAAATGACTATTGTGCAGGAAGCAACTCTTCCAGCAATACTTAAAGGTAAGGATGTCCTCGCCAAGGCTAGAACGGGCACTGGAAAAACAGTAGCCTTTTTGCTTCCATCAATTGAATTTGTTGCAAAATTACCGCCAAGTGGTCATGATCAAAGGCGGTCACCAATTCATGTTCTTGTCATATGCCCAACTAGAGAGCTTGCAAGTCAAGCTGCTGCAGAGGCCACTAAATTGCTGAAATATCATCCTACCATTGGCGTTCAAGTTGTGATTGGAGGGACAAAACTTGGTTTAGAACAGAAACGCATGCAAACAAAACCTTGCCAGATCCTTGTTGCTACACCTGGAAGGCTTAGAGATCATGTTGAGAATACTTCTGGTTTTGCAACTAGGCTAATGGGTGTAAAGATCTTGGTGCTTGATGAAGCTGATCATTTACTAGACATGGGATTCCGCAAAGACATTGAAAAGATTATTGCAGCAACCCCTAAACAACGACAGACACTTATGTTTTCTGCCACCGTTCCTGAAGAGGTGCGTCAAATCTGTCATATTGCTTTGAGAAGGGATCATGTTTATGTCAATACAGTTGAAGCGGGCAGTGAGGAGACACATTCACGGGTTGGCCAGACACATTTAGTTGCCACATTAGACAAGCATTTCTCTGTACTCTATACTCTTCTGAAGGAGCACATTGTAGATGATGTTGAATATAAGGTTCTTGTTTTCTGCACAACTGCTATGGTCACAAAACTGGTTGCTGAGTTTCTTGGAAAGTTGAAGTTGAATGTAAGAGAAATCCATTCAAGAAAGCCTCAGAGTTATAGAACCAGAGTCTCTGAGGAGTTTAGGAAGTCAAAGGGTATCATTTTAGTTACTTCCGATGTATCTGCACGCGGAGTTGATTACCCAGATGTCACCCTTGTTATACAGCTTGGTTTACCAGCCGATAAGGCACAGTATATACATCGACTGGGAAGAACAGGGCGGAGAGGTAAAGATGGCAGGGGTGTATTGATACTGGCTCCTTGGGAGGAGTTCTTTTTATCTACCACCAAAGATTTGCCTATTGAGAAAGCTGCAGTACCTTTAGTTGACCCTGAAACTAAGAAAAAGGTGGAAAGGGCTGTAGCTCAAGCAGAGATGAAGAGTAAAGAAGCAGCATATCAGGCATGGCTTGGTTACTACAATTCCAACAAGAAAGTAGGGAAAGACAAGTATAGGCTAGTAGAGCTTGCAAATGAGTTCAGTAGAAGCATGGGACTTGATACCCCTCCTGGTATACCTAAGCTAATTCTTGGTAAGATGGGACTTAGAAATATCCCTGGTTTACGTGCCAAATAG 1743 0.4228 MKPLSSRIPHPSFSSTLFPFKPKHRRPSSKKKAQLISDSVTELRTDSYPVSIKSDEFLTEQDEDEDEDGESEGISEKNDEKLNKSKTVLFVNEKPTPIASVSEPSDSHLSHTRFDQCSVSQLSLKAVKDAGYEKMTIVQEATLPAILKGKDVLAKARTGTGKTVAFLLPSIEFVAKLPPSGHDQRRSPIHVLVICPTRELASQAAAEATKLLKYHPTIGVQVVIGGTKLGLEQKRMQTKPCQILVATPGRLRDHVENTSGFATRLMGVKILVLDEADHLLDMGFRKDIEKIIAATPKQRQTLMFSATVPEEVRQICHIALRRDHVYVNTVEAGSEETHSRVGQTHLVATLDKHFSVLYTLLKEHIVDDVEYKVLVFCTTAMVTKLVAEFLGKLKLNVREIHSRKPQSYRTRVSEEFRKSKGIILVTSDVSARGVDYPDVTLVIQLGLPADKAQYIHRLGRTGRRGKDGRGVLILAPWEEFFLSTTKDLPIEKAAVPLVDPETKKKVERAVAQAEMKSKEAAYQAWLGYYNSNKKVGKDKYRLVELANEFSRSMGLDTPPGIPKLILGKMGLRNIPGLRAK 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1033 580 MobiDBLite consensus disorder prediction 58 73 - -
Lal18g1033 580 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 480 IPR027417 -
Lal18g1033 580 Pfam Helicase conserved C-terminal domain 358 465 IPR001650 -
Lal18g1033 580 SMART ultradead3 131 344 IPR014001 -
Lal18g1033 580 MobiDBLite consensus disorder prediction 1 79 - -
Lal18g1033 580 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 25 76 578 - -
Lal18g1033 580 SMART helicmild6 384 465 IPR001650 -
Lal18g1033 580 Gene3D - 336 558 IPR027417 -
Lal18g1033 580 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 143 326 IPR014001 -
Lal18g1033 580 CDD SF2_C_DEAD 343 474 - -
Lal18g1033 580 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 112 140 IPR014014 GO:0003724
Lal18g1033 580 CDD DEADc_MSS116 119 328 - -
Lal18g1033 580 Gene3D - 58 328 IPR027417 -
Lal18g1033 580 Pfam DEAD/DEAH box helicase 138 314 IPR011545 GO:0003676|GO:0005524
Lal18g1033 580 MobiDBLite consensus disorder prediction 33 54 - -
Lal18g1033 580 PANTHER RNA HELICASE 76 578 - -
Lal18g1033 580 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 360 510 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1033 Lal-Chr18 13313684 13318317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1033 101 493 Eukaryotic Initiation Factors Gene Family AT3G19760 27.913 1.84e-46 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1033 - - lang:109336771 972.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0644 6 4203966 4209401 Lal18g1033 18 13313684 13318317 LSH