Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1029 ATGAGGAATGGAAAGAGAAGGCTTCAGAGCCATGCAATAAACTTGTATTCTGAACACATTGTTGAAGAGATACATGCAACAACATATAAGAATCATAATCCAAGACAGCCTCAGAAGAACCAATTAACTATTGAGTCTAGGTGTAATAGCTTGATCAGAGAAATTGAACCAAAGATTGAAGAACAATTACCAGTGAGGTTAAGCAATGGACTTGAGGGGGTTGATTCGGAATCACGGGGAATGAACACTTTGTCTACCCTTAAAGTTTCTGCAAATATAAGCAAGGTGGATAACACTATCACCTCAAGTAATGCACATCATATTAGGAGTACAACACAGCATAATACTCTACCTACATATAATTTTGCTCAAATCATTTTGAAGCAAAAATTGAAGGGAAAAGGGATTATTTGCAAAGGTTTAGACAAAAGTATCAATCCTAGAGGATTACTTATGGGACAGGAGGATGAAAATCCTTCTTTTGAAGCTGTGTTTCAATCCGGAACACTGCTAAGATCGAATGATGATGATGATGATAATAGGCCTTTCCTGCAAGCAATAGGAAAATCTGGAATAGAATATTTTAATGATGGGATCAACTTAAGAGAGTGGTTGAATTCTGAAGGACATAAAATGAATAAATCAGGAAGCATACTTATATTTAAGCAGATAATGGAATTGGTTGATTTTGCACACTCCCAAGGGATGGTTTTGCAAGACTTAAGACCATCTTGTTTCACTTTATCGTCTTCAGGTAAAATTATATACATTGGTTCGTCGGGCGAACTAGATTTGGATAAAGTCATGACAAGGAAAAGGCCTATGGAACATGATATCCGTGCTTCCCGAAGTTTGAGCACAAAGTTGCAAAAGTCGTGTGAGGAGACAAGAACTGTTTGGCAGCAGCAGCAGCATCACTTCACTGGTATTCATGGCTGCAGCACTACAACAGTGAATCAAACTGACCTTTACATGAACAGGCACATGGAATCAAGGAATAAAGGAAGTTTGTGCCACAACAGTTCTAACCATCAACATAATTCTACTAAAGAAAAACAGTTTACATCTGTAACCATGCAACTAGAAGAGAAGTGGTATTGTAGTCCAGAAGAGATCAATCACGGAGTTTGCACGTTTTCATCAAATATTTATAGCCTTGGAGTTCTTCTTTTTGAGTTGCTATGCAATATTGAGTCATGGGAGGTGCACTCAGCTGTGATGTCAGATTTGGGTCATAGAATCTTACCACCAAGATTTCTATCAGAAAATTCAAAGGAAGCTGGATTTTGTCTTTGGCTTCTTCATCCTGAACCGTCCTCTCGCCCCAATATTAGGATGATTTTAGAGTCTGAATTTATGCATGAATCAGAGGACTCAAATTCTGGAGATGATATCGCAGTATCTGGTGATGATGAAGTTGAAACGGAACAATTACTACATTTCTTAAGTTCACTTAAAGACGAAAAGCGAAATCAGGCAGCAAAGTTGGCAGAAGAGCTAAGTTGTGTGGATGAAGATATTAAGGAGATAGAAAAAAGTTATTCTTTTAGAACAGATTCAGTATTTCCATTGGCACAATTTAACTGTCCTTCTAGTTCAGATATTAGTAGATCTATTCCAAGTTCTTGTGTTAATGAATCAAGATTTATGAGTAATATAAATCAGCTAGAGAATTCTTACTTTTCCACTAGATTCCAAATCCAGCTTAAAGAAGCTTCAGCTATTTCAAGCTATGCTGAAGATGTGCTGGAAAGTAGACTGAGATTTCCTCATGCACATAATTTAAATAAGGAGCCAAAAATAATTCAGAATTCTGTTGGTCGTCTAGGATCCTTCTTTGAAGGTTTATGCAAGTTTGCTCGTTACAGCAAGTTCGAAGAGCTTGGTACATTAAGAAATAGAGATCTGCTTAGTTCTGCAAATGTAATTTGTGCTTTAAGTTTTGATCGCGATGAGGACTACATTGCAGCTGCTGGAGTTTCAAAGAAAATCAAGATTTTTGATTTGAGTACTATTTTGTGTGATTCTATTGATATTCAATACCCCGTAGTTGAGATGTCGAATAAATCAAAGCTTAGCTGTGTGTGCTGGAATAGTTATATAAAAAATCATCTAGCATCTACCGACTATGATGGCGTGGTTCAGATGTGGGATGCAGGCACTGGCCAGCCATTGTCAAAATACTTGGAACACCAAAAGAGAGCTTGGTCTGTTCACTTTTCTCTTTCTGACCCAAAATTGTTTGCTAGTGGAAGTGATGACTGCTCTGTCAAACTGTGGAATGAAAATTCTATAGGAACCATCCAGAGCCCTGCCAATGTATGCTGTGTTCAGTTTAATCCTTACTCAAAACATCTTTTGTTTTTTGGATCAGCTGATTATAAAGTCTATGGCTATGATCTTCGTCACACTAGGGTCCCTTGGTGCACATTATCTGGTCATGGAAAAGCTGTTAGCTATGTAAAATTTCTAGATGTGGACACAGTTGTCTCTGCTTCCACTGACAACTCTTTGAAGCTCTGGGACATGAAGAAAACCAGCTCTTCTGATGCTTGTGGCTTAACCTTTAAAGGTCATAGTAATGAAAAGAATTTCGTCGGTTTATCAGTTTTGGATGAGTACATTGCATGTGGTTCAGAAACTAATGAGGTATACTGCTATCACAAATCTCTGCCAGTGCCAATCACTTCTCACAAATTTGAGTCCATCAACCCCATTTCTGGTCATTCAAATAGTGATGACAACAATGGACAGTTTGTTTCCAGTGTCTGCTGGAGAAAGAAGTCTAATGTGCTTGTTGCAGCCAACTCAATTGGAATTATGAAACTACTGCAGATGGTCTGA 2844 0.3794 MRNGKRRLQSHAINLYSEHIVEEIHATTYKNHNPRQPQKNQLTIESRCNSLIREIEPKIEEQLPVRLSNGLEGVDSESRGMNTLSTLKVSANISKVDNTITSSNAHHIRSTTQHNTLPTYNFAQIILKQKLKGKGIICKGLDKSINPRGLLMGQEDENPSFEAVFQSGTLLRSNDDDDDNRPFLQAIGKSGIEYFNDGINLREWLNSEGHKMNKSGSILIFKQIMELVDFAHSQGMVLQDLRPSCFTLSSSGKIIYIGSSGELDLDKVMTRKRPMEHDIRASRSLSTKLQKSCEETRTVWQQQQHHFTGIHGCSTTTVNQTDLYMNRHMESRNKGSLCHNSSNHQHNSTKEKQFTSVTMQLEEKWYCSPEEINHGVCTFSSNIYSLGVLLFELLCNIESWEVHSAVMSDLGHRILPPRFLSENSKEAGFCLWLLHPEPSSRPNIRMILESEFMHESEDSNSGDDIAVSGDDEVETEQLLHFLSSLKDEKRNQAAKLAEELSCVDEDIKEIEKSYSFRTDSVFPLAQFNCPSSSDISRSIPSSCVNESRFMSNINQLENSYFSTRFQIQLKEASAISSYAEDVLESRLRFPHAHNLNKEPKIIQNSVGRLGSFFEGLCKFARYSKFEELGTLRNRDLLSSANVICALSFDRDEDYIAAAGVSKKIKIFDLSTILCDSIDIQYPVVEMSNKSKLSCVCWNSYIKNHLASTDYDGVVQMWDAGTGQPLSKYLEHQKRAWSVHFSLSDPKLFASGSDDCSVKLWNENSIGTIQSPANVCCVQFNPYSKHLLFFGSADYKVYGYDLRHTRVPWCTLSGHGKAVSYVKFLDVDTVVSASTDNSLKLWDMKKTSSSDACGLTFKGHSNEKNFVGLSVLDEYIACGSETNEVYCYHKSLPVPITSHKFESINPISGHSNSDDNNGQFVSSVCWRKKSNVLVAANSIGIMKLLQMV 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1029 947 Gene3D Transferase(Phosphotransferase) domain 1 197 463 - -
Lal18g1029 947 ProSiteProfiles Protein kinase domain profile. 111 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal18g1029 947 Gene3D - 612 947 IPR015943 GO:0005515
Lal18g1029 947 ProSiteProfiles Trp-Asp (WD) repeats profile. 728 770 IPR001680 GO:0005515
Lal18g1029 947 PANTHER PROTEIN SPA1-RELATED 2 14 947 IPR044630 GO:0009640
Lal18g1029 947 Coils Coil 479 513 - -
Lal18g1029 947 SUPERFAMILY Protein kinase-like (PK-like) 193 456 IPR011009 -
Lal18g1029 947 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 811 844 - -
Lal18g1029 947 Pfam WD domain, G-beta repeat 722 761 IPR001680 GO:0005515
Lal18g1029 947 Pfam WD domain, G-beta repeat 810 842 IPR001680 GO:0005515
Lal18g1029 947 PANTHER LIGASE COP1, PUTATIVE-RELATED 14 947 - -
Lal18g1029 947 ProSiteProfiles Trp-Asp (WD) repeats profile. 811 851 IPR001680 GO:0005515
Lal18g1029 947 SUPERFAMILY WD40 repeat-like 640 937 IPR036322 GO:0005515
Lal18g1029 947 SMART WD40_4 721 761 IPR001680 GO:0005515
Lal18g1029 947 SMART WD40_4 679 718 IPR001680 GO:0005515
Lal18g1029 947 SMART WD40_4 899 945 IPR001680 GO:0005515
Lal18g1029 947 SMART WD40_4 764 800 IPR001680 GO:0005515
Lal18g1029 947 SMART WD40_4 804 842 IPR001680 GO:0005515
Lal18g1029 947 SMART WD40_4 849 888 IPR001680 GO:0005515
Lal18g1029 947 SMART WD40_4 624 668 IPR001680 GO:0005515
Lal18g1029 947 SMART serkin_6 126 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal18g1029 947 ProSitePatterns Trp-Asp (WD) repeats signature. 829 843 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1029 Lal-Chr18 13272767 13283569 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1029 725 887 Miscellaneous Gene Families AT5G08390 25.595 1.13e-06 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Lal18g1029 WD40 0.0043 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1029 K16240 - gmx:100799267 1233.39