Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal18g1000 | ATGGATCGAGAATGGGGTTCAAAGCCTGGGAGCGGTGGCGCCGCCACCGCTCAGAACGAAGCCATCGACCGTCGTGAGCGTCTCCGGCGACTGGCCCTTGAGACCATTGATCTCGCCAAAGATCCCTATTTCATGCGCAATCATCTTGGCAGCTATGAATGCAAACTTTGTTTGACTCTGCATAACAATGAGGGGAACTACTTGGCCCACACTCAGGGAAAGCGCCATCAGACTAATTTGGCTAAGAGAGCTGCTCGCGAAGCCAAAGACGCTCCTGCTCAACCTCAACCTCACAAGCGCAATGTTTCTGTTCGCAAGACAGTTAAGATTGGTCGGCCTGGGTACCGGGTGACTAAGCAATATGATTCAGAGACAAAGCAAAGATCTCTTCTATTCCAGATTGAATATCCTGAGATTGAAGACCTCTCAAAGCCAAGGCACCGATTTATGTCTTCTTACGAACAGAGGGTGCAACCATTTGATAAAAGTTACCAGTATCTTTTGTTCGCAGCTGAGCCATACGAAATAGTTGCTTTCAAGGTACCTAGCACAGAGATTGATAAATCCACCCCAAAGTTCTTCTCACACTGGGACCCAGACTCGAAGATGTTCACACTGCAGTTGTATTTTAAAACCAAGCCACCGGAGGCAAATAAACCACAACCTCCCTCTACAGCCAATGGCCCAGAAGCACCAGGTGTTCCTCCAAGGCCTTTGGCCCCGCCACCCCAAGCTCCACCACCACCTCCTCCACAAGGGCTTCCTCCTGGTGCACCTATGGGAAATCCTGCCAGAGCTCCTCCACCTCCGATGCCAGGATCGTTGCCAGCTCCGCCTCCAATGGCAGCAAATGGTCCTAGACCAGCACCACCCAGTGGAATGCCATCTATCCCACCCCCACCACCCTCCAGTTTCAACATGGGTGTCAGGCCTCCAATGCCCCCTCCACAAGGTTTTCCGAGCCAACAGATGCAAGGTCATGGTGTCCGTCCACCTCCACCACCCCCTAATATGGGACATTAG | 1023 | 0.521 | MDREWGSKPGSGGAATAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPAQPQPHKRNVSVRKTVKIGRPGYRVTKQYDSETKQRSLLFQIEYPEIEDLSKPRHRFMSSYEQRVQPFDKSYQYLLFAAEPYEIVAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKTKPPEANKPQPPSTANGPEAPGVPPRPLAPPPQAPPPPPPQGLPPGAPMGNPARAPPPPMPGSLPAPPPMAANGPRPAPPSGMPSIPPPPPSSFNMGVRPPMPPPQGFPSQQMQGHGVRPPPPPPNMGH | 340 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal18g1000 | 340 | MobiDBLite | consensus disorder prediction | 213 | 340 | - | - | |
| Lal18g1000 | 340 | Gene3D | - | 94 | 218 | - | - | |
| Lal18g1000 | 340 | PANTHER | SPLICING FACTOR 3A SUBUNIT 2 | 1 | 333 | - | - | |
| Lal18g1000 | 340 | Pfam | Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) | 110 | 204 | IPR031781 | - | |
| Lal18g1000 | 340 | SUPERFAMILY | beta-beta-alpha zinc fingers | 48 | 82 | IPR036236 | - | |
| Lal18g1000 | 340 | SMART | ZnF_U1_5 | 49 | 83 | IPR003604 | GO:0003676|GO:0008270 | |
| Lal18g1000 | 340 | ProSiteProfiles | Zinc finger matrin-type profile. | 52 | 82 | IPR000690 | GO:0003676|GO:0005634|GO:0008270 | |
| Lal18g1000 | 340 | SMART | CactinC_cactus_3 | 89 | 217 | - | - | |
| Lal18g1000 | 340 | MobiDBLite | consensus disorder prediction | 216 | 319 | - | - | |
| Lal18g1000 | 340 | PRINTS | Proline rich extensin signature | 211 | 232 | - | - | |
| Lal18g1000 | 340 | PRINTS | Proline rich extensin signature | 235 | 251 | - | - | |
| Lal18g1000 | 340 | PRINTS | Proline rich extensin signature | 255 | 272 | - | - | |
| Lal18g1000 | 340 | PRINTS | Proline rich extensin signature | 279 | 304 | - | - | |
| Lal18g1000 | 340 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Lal18g1000 | 340 | Gene3D | Classic Zinc Finger | 46 | 89 | - | - | |
| Lal18g1000 | 340 | Pfam | Zinc-finger of C2H2 type | 52 | 76 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lal18g1000 | Lal-Chr18 | 12992256 | 12996758 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lal18g1000 | 1 | 293 | C2H2 Transcription Factor Family | AT2G32600 | 77.474 | 1.71e-139 | 395 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lal18g1000 | K12826 | - | gmx:100791333 | 483.026 |