Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0984 ATGAAAAGGGAAGAAGATCAAGGACAGTATTCTTCTCAAGCTATCAACAATAACAACTTTCAAAGCTACCAAGAACAACTACTCCTTCAACAACAGATGCATCATCATCAGCAACAAAACAATGAAATGAATAATATCTTTGGAGGAGGAAGAGGGTTCATGATCCCTCATGAAGTTTCTCAATGGTCTATACCTCCGGTTCAGTCCTTTAACCCGAACCCGGTTCGAGATCATGACCAGCTTCTTGTCCCTCCTCCTCCAGTGCCATCATCACCATACTCAAGCTTCTTCAATAGAAGGGTTCCTTCTCTTCAGTTTGCATATCATGAGGTTCCTTCTGATCATCTTAGAATGTTGTCTGATACACTTGGACCAATGGTTCAACCAGGTTCAGTTCCCTTTGGACTCCATGCTGAGTTGGGTAAGATGAATGCTCAAGAAATCATGGATGCTAAGGCTCTTGCACAGTCTAAGAGTCACAGTGAAGCTGAAAGGAGACGCAGAGAGAGAATCAATAACCATCTTGCCAAACTTCGTAGCTTATTACCCAACACAACCAAAACAGATAAAGCTTCATTGCTTGCAGAAGTGATTCAGCATGTGAAGGAACTGAAGCGTCAAACTTCATTGATAGAGGAAACAAGTCCAGTACCAACTGAATCTGACGAGTTAACAGTGGACACAGCTGATGAAGATGGCAAGTTTGTGATCAAAGCCTCACTATGCTGTGAAGATCGGTCAGATCTGTTACCTGATCTCATCAAAACCTTGAAATCATTGAGATTAAGAACCCTAAAAGCTGAGATAACAACGCTTGGTGGGAGAGTGAAGAATGTGCTTTTCATCACTGGTGATAATGAGGATTCAAGTAGCAGTGCAGAGCAATGCATGCAGCAGCAACAACAATATTGTATTAGTTCAATACAAGAAGCACTTAAGGCTGTGATGGAGAAGAATGGTGGAGATGAATCTGCTTCTGGAAATGTTAAGAGACAAAGGACTAATAATATCAATATCCTTGAACAAAGGTCTTAA 1035 0.4126 MKREEDQGQYSSQAINNNNFQSYQEQLLLQQQMHHHQQQNNEMNNIFGGGRGFMIPHEVSQWSIPPVQSFNPNPVRDHDQLLVPPPPVPSSPYSSFFNRRVPSLQFAYHEVPSDHLRMLSDTLGPMVQPGSVPFGLHAELGKMNAQEIMDAKALAQSKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTSLIEETSPVPTESDELTVDTADEDGKFVIKASLCCEDRSDLLPDLIKTLKSLRLRTLKAEITTLGGRVKNVLFITGDNEDSSSSAEQCMQQQQQYCISSIQEALKAVMEKNGGDESASGNVKRQRTNNINILEQRS 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0984 344 PANTHER TRANSCRIPTION FACTOR BHLH30 68 341 - -
Lal18g0984 344 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 213 IPR036638 GO:0046983
Lal18g0984 344 Pfam Helix-loop-helix DNA-binding domain 158 204 IPR011598 GO:0046983
Lal18g0984 344 CDD bHLH_AtAIG1_like 150 227 - -
Lal18g0984 344 PANTHER TRANSCRIPTION FACTOR BHLH30 68 341 IPR045847 GO:0003700|GO:0006355
Lal18g0984 344 SMART finulus 161 210 IPR011598 GO:0046983
Lal18g0984 344 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 155 204 IPR011598 GO:0046983
Lal18g0984 344 MobiDBLite consensus disorder prediction 325 344 - -
Lal18g0984 344 MobiDBLite consensus disorder prediction 318 344 - -
Lal18g0984 344 Gene3D - 150 213 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0984 Lal-Chr18 12790908 12794924 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0984 11 343 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 56.906 5.86e-111 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal18g0984 HLH 2.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0984 - - qsu:112015145 440.269