Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0978 ATGTTAGATCTTGTTACTCTCATAGAGAGAGACCTCATGTTGTTCTGTTCCAATCTTGAATATTTTGTGCAGGCACCCATGCCTCCAAGTTTCAATACACTTGAATACTCTCTTGATAATCAAAACCATAACCATTTTTATCCACAACAACAACAAATGAAGTTTCCAATAGGCGAAACTTCTGGCGAAAACAACAACCTTATGGTAGATTACATGCCTCAACAACAACAACCACAACAAATATCACCATCAGGGTTTTATGGTGCAACTAGTTTTGATAAACTGAGTTTTGCAGACGTGATGCAGTTCGCGGATTTTGGACCCAAATTGGCCTTAAATCAAGCCAAGAATTGCGAAGAAACCGGGATCGACCCGATTTGCTTCCTCAAGTTTCCTGTCTTGAATGACAAAAATTTGATGTTGAACAACATAGAAGGTGGTGATAAAGAAGCACAAAATGATGATGAGAGGTTCGACATGGTGAGCATGGAAGATAAGTCAATAGTAGGTGCAACTGCAGAGGAAGAAATGATTAGAAAAGATGAAGAAACTTGGGGTTCTGATGAAAACAACTCAATGCAGATTCGGTTTCTTGGGCATGAAGAACTCCAGAATAAGAACTCTACGGTGAAGGAGAACAAGAACAAAAGGAAGAGGCCAAGAACTGAGAAAACAAGTGAAGAAGTTGAGAGCCAACGCATGACTCACATAGCAGTTGAAAGGAACCGAAGGAAGCAAATGAATGAGCATCTTCGTGTTCTCAGATCCCTCATGCCTGGTTCATACGTGCAAAGGGGTGATCAAGCTTCTATAATTGGGGGAGCCATAGAGTTTGTGAGGGAATTGGAGCAACTTCTACAGTGTTTAGAATCACAGAAGAGGAGAAGAATACTTGGAGAAGCACAATCAAGACAAGTTGGTGATCCATCTCTTGAAACACAACAACCTATTCAACCTCCATTCTGTCCACCTTTGCCAAATGATCAGATAAAGATTGTTGAGTTAGACACCAGAATTCGCGAAGAAACCGTGGAGAACAAGTCTTGTTTGGCTGATGTAGAAGTGAAGCTTCTAGGTTTTGATGCAATGATCAAAATCCTATCAAGAAGGAGACCAGGACAGTTGATCAAGACCATTGCTGCACTTGAAGATCTTCAGTTAATTATCCTTCATACTAACATAACCACTATTGACCAAACAGTTCTTTATTCATTCAATGTCAAGGTGGCTAGTGATTCAAGGTTCACTGCAGAAGATATAGCTAGCTCTATTCAGCAGATATTCACTTTTATCCATGCAAACACTAGCATGTGA 1314 0.4018 MLDLVTLIERDLMLFCSNLEYFVQAPMPPSFNTLEYSLDNQNHNHFYPQQQQMKFPIGETSGENNNLMVDYMPQQQQPQQISPSGFYGATSFDKLSFADVMQFADFGPKLALNQAKNCEETGIDPICFLKFPVLNDKNLMLNNIEGGDKEAQNDDERFDMVSMEDKSIVGATAEEEMIRKDEETWGSDENNSMQIRFLGHEELQNKNSTVKENKNKRKRPRTEKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRILGEAQSRQVGDPSLETQQPIQPPFCPPLPNDQIKIVELDTRIREETVENKSCLADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDLQLIILHTNITTIDQTVLYSFNVKVASDSRFTAEDIASSIQQIFTFIHANTSM 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0978 437 PANTHER TRANSCRIPTION FACTOR FAMA 52 437 IPR044283 GO:0003700|GO:0010052
Lal18g0978 437 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 231 297 IPR036638 GO:0046983
Lal18g0978 437 MobiDBLite consensus disorder prediction 219 234 - -
Lal18g0978 437 Pfam Helix-loop-helix DNA-binding domain 232 283 IPR011598 GO:0046983
Lal18g0978 437 MobiDBLite consensus disorder prediction 201 234 - -
Lal18g0978 437 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 231 282 IPR011598 GO:0046983
Lal18g0978 437 PANTHER TRANSCRIPTION FACTOR FAMA 52 437 - -
Lal18g0978 437 SMART finulus 237 288 IPR011598 GO:0046983
Lal18g0978 437 Gene3D - 221 296 IPR036638 GO:0046983
Lal18g0978 437 CDD bHLH_AtFAMA_like 234 301 - -
Lal18g0978 437 CDD ACT_UUR-ACR-like 363 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0978 Lal-Chr18 12716222 12719100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0978 57 437 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 61.881 1.92e-151 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal18g0978 HLH 9.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0978 - - gmx:100793349 570.081