Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0970 ATGGCCTCAAACTCAAGAAGCTCCATTATTCATGTATCTCTCATGGTAGCTTTCCTTGCAAGTAACATTGCTTTAGCAAATGACAATGTTCCCATTCCAGCTGTCAAGTCCCAATTGAACAGTTGGTACCATCAAAATGTGAAACCCTTATCTCAAAGAAAGACCACCCTAGACCCAGCACTAGTTGCTGCAGAAAGTGCAGCTACAGTTATCAAGGTCATGCAAGATGGTAGCGGGAATTTTAAGACTATCAATGAAGCCATTAAGAGCATTCCTAAAGGGAATACTAAACGTGTGATGGTGTACATTGGAAGTGGAACTTATAATGAGAAAATAAGGATTGAGAGGGAAAAACCTTTTATTACGTTGTATGGTGCTCCAGGGAAGATGCCAAACCTCACCTATGGAGGCACTGCTCTCGAATATGGCACTCTTGATAGTGCGACATTAATTGTTGAATCAGATTACTTTGTGGCTTCAAATATCATAATCTCGAATTCTGCACCAAGACCTGATGGAAAGAGGAAAGGAGCCCAAGCTGTAGCATTGAGAGCTTCTGGTGACAAAGCAACATTCTATAAAGTTACACTATTGGGATTCCAAGACACATTGTGCGATGACGCACATTGGCATATTTACAAAGATTGCTTGATTCAGGGCACCGTTGATTTTGTTTTTGGAAATGGAAAGACACTGTTTTTGAACACTGAGTTAAGAGTGCTTGGAGATGAAGGCATGTCAGTAATAACAGCACATGCAAGAGATAAGAAGACAGATGATACTGGCTACTCATTTGTTCATTGTGACGTTACTGGGACTGGGAATGGGACTCTCCTTGGAAGAGCATGGATGTCTAAATCAAAAGTGGTCTTTGCTTATTCCAATATAGGCAGTGTTGTGAATAAAGCAGCGTGGAGCAACAACCTTCACCCTGAATATGATGGAAACCTATATTTTGGAGAGTACAAGAACAAGGGACCTGGTGCAGATCAAGAAGGGCGTTACAAGTACACAAAACAACTTAGTGAAGTAGAGACCAGACCTTTTATAACTCTTGGCTACATTCAAGGTTCAAAATGGCTGCTTCCTCCTCCAAATCCTGAAGTGTAA 1110 0.4117 MASNSRSSIIHVSLMVAFLASNIALANDNVPIPAVKSQLNSWYHQNVKPLSQRKTTLDPALVAAESAATVIKVMQDGSGNFKTINEAIKSIPKGNTKRVMVYIGSGTYNEKIRIEREKPFITLYGAPGKMPNLTYGGTALEYGTLDSATLIVESDYFVASNIIISNSAPRPDGKRKGAQAVALRASGDKATFYKVTLLGFQDTLCDDAHWHIYKDCLIQGTVDFVFGNGKTLFLNTELRVLGDEGMSVITAHARDKKTDDTGYSFVHCDVTGTGNGTLLGRAWMSKSKVVFAYSNIGSVVNKAAWSNNLHPEYDGNLYFGEYKNKGPGADQEGRYKYTKQLSEVETRPFITLGYIQGSKWLLPPPNPEV 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0970 369 PANTHER PECTINESTERASE 63-RELATED 36 362 - -
Lal18g0970 369 SUPERFAMILY Pectin lyase-like 67 362 IPR011050 -
Lal18g0970 369 Pfam Pectinesterase 71 357 IPR000070 GO:0030599|GO:0042545
Lal18g0970 369 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 36 362 - -
Lal18g0970 369 ProSitePatterns Pectinesterase signature 2. 218 227 IPR033131 -
Lal18g0970 369 Gene3D - 64 364 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0970 Lal-Chr18 12612856 12614729 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0970 10 365 Carbohydrate Esterase AT1G69940 53.090 9.08e-139 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0970 K01051 - gmx:100775404 525.013