Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0969 ATGGTAGCTTTCCTTGCAAGTAACATTGCTTTAGCAAATGACAATGTTCCCATTCCAGCTGTCAAGTCCCAATTGAACAGTTGGTACCATCAAAATGTGAAACCCTTATCTCAAAGAAAGACCACCCTAGACCCAGCACTAGTTGCTGCAGAAAGTGCAGCTACAGTTATCAAGGTCATGCAAGATGGTAGCGGGAATTTTAAGACTATCAATGAAGCCATTAAGAGCATTCCTAAAGGGAATACTAAACGTGTGATGGTGTACATTGGAAGTGGAACTTATAATGAGAAAATAAGGATTGAGAGGGAAAAACCTTTTATTACGTTGTATGGTGCTCCAGGGAAGATGCCAAACCTCACCTATGGAGGCACTGCTCTCGAATATGGCACTCTTGATAGTGCGACATTAATTGTTGAATCAGATTACTTTGTGGCTTCAAATATCATAATCTCGAATTCTGCACCAAGACCTGATGGAAAGAGGAAAGGAGCCCAAGCTGTAGCATTGAGAGCTTCTGGTGACAAAGCAACATTCTATAAAGTTACACTATTGGGATTCCAAGACACATTGTGCGATGACGCACATTGGCATATTTACAAAGATTGCTTGATTCAGGGCACCGTTGATTTTGTTTTTGGAAATGGAAAGACACTGTTTTTGAACACTGAGTTAAGAGTGCTTGGAGATGAAGGCATGTCAGTAATAACAGCACATGCAAGAGATAAGAAGACAGATGATACTGGCTACTCATTTGTTCATTGTGACGTTACTGGGACTGGGAATGGGACTCTCCTTGGAAGAGCATGGATGTCTAAATCAAAAGTGGTCTTTGCTTATTCCAATATAGGCAGTGTTGTGAATAAAGCAGCGTGGAGCAACAACCTTCACCCTGAATATGATGGAAACCTATATTTTGGAGAGTACAAGAACAAGGGACCTGGTGCAGATCAAGAAGGGCGTTACAAGTACACAAAACAACTTAGTGAAGTAGAGACCAGACCTTTTATAACTCTTGGCTACATTCAAGGTTCAAAATGGCTGCTTCCTCCTCCAAATCCTGAAGTGTAA 1068 0.412 MVAFLASNIALANDNVPIPAVKSQLNSWYHQNVKPLSQRKTTLDPALVAAESAATVIKVMQDGSGNFKTINEAIKSIPKGNTKRVMVYIGSGTYNEKIRIEREKPFITLYGAPGKMPNLTYGGTALEYGTLDSATLIVESDYFVASNIIISNSAPRPDGKRKGAQAVALRASGDKATFYKVTLLGFQDTLCDDAHWHIYKDCLIQGTVDFVFGNGKTLFLNTELRVLGDEGMSVITAHARDKKTDDTGYSFVHCDVTGTGNGTLLGRAWMSKSKVVFAYSNIGSVVNKAAWSNNLHPEYDGNLYFGEYKNKGPGADQEGRYKYTKQLSEVETRPFITLGYIQGSKWLLPPPNPEV 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0969 355 PANTHER PECTINESTERASE 63-RELATED 22 348 - -
Lal18g0969 355 Gene3D - 50 350 IPR012334 -
Lal18g0969 355 SUPERFAMILY Pectin lyase-like 53 348 IPR011050 -
Lal18g0969 355 Pfam Pectinesterase 57 343 IPR000070 GO:0030599|GO:0042545
Lal18g0969 355 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 22 348 - -
Lal18g0969 355 ProSitePatterns Pectinesterase signature 2. 204 213 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0969 Lal-Chr18 12608895 12610726 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0969 1 351 Carbohydrate Esterase AT5G07410 53.276 2.84e-138 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0969 K01051 - gmx:100775404 516.153