Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0960 ATGGGGAAAGATACATCAAATGCTGAATCCCATCATACACGGCTTGGTCTTTTAAAAGATCAAGTTCATTTGGTTAAAAGGAAAGACTCTGATCGCTATGAGATTGCTTCAATCAAATATCAACTATCATTTGAGAAGGGATTTTTTGTAGTAATTCGCGCATGCCAAATGTTAGCACAAAAGAATGATGGAATCATATTGGTAGGTGTGGCAGGTCCTTCTGGGGCCGGGAAGACTGTATTTACTGAAAAAATACTCAGCTTCATGCCCAGCATTGCAGTAATTTCGATGGATAATTACAATGATTCTAGTCGAATTGTTGATGGAAACTATGATGATCCGCGCTTAACAGACTATGACACTTTGCTCCAGAATCTACATGATTTAAAGGAAGGAAAGCCAACCCAGGTTCCTATATATGATTTCAAGTCCAGCTCACGAACAGGATACAGGACAGTAGAACCCCCAAGCTCCGAAGTTGTAATTATAGAGGGTATCTATGCCTTGAGTGAGAAGTTGCAATCTCTACTGGATCTTCGAGTATCTGTTACGGGTGGAGTTCACCTTGACCTTGTAAAGCGAGTTATACGTGACATACAACGTGCTGGTCAAGAGCCTGAAGAAATTATTCATCAAATATCTGAGACGGTATATCCAATGTACAAGGCCTATATTGAGCCTGATCTCCAGACCGCACATATAAAAATCACCAACAAATTCAATCCGTTTATTGGATTCCAGAGCCCTACTTACATATTAAAGTCAACAAGGAGTTTAACAGCGGATCAAATTAAATCCCTTCTCTCTGAAGGTTTTAAGGAAACAACGGAGCAGATTTATGACATATATCTTCTGCCACCCGGTGAAGATCCGAAGACATGCCAATCATATTTGAGGATGCAAAATAAGGAAGGGAAATACAGTCTCATGTTTGAGGAATGGGTGAAAGATAGTCCATTTGTCATATCACCAAGAATTACTTTTGAGGTCAGTGTGCGCCTTCTCGGTGGACTAATGGCCCTGGGATACACAATAGCCACAATCGCTAAAAGAAACAGTCATGTCTTTTCTGATGATAGTATTTGTGTAAAACTAGACTGGCTTGAGCAACTTAATCGACACTATATTCAGGTACAAGGAAGAGATCGCTTAGTTGTAAAATGCATAGGAGAACAGTTGGGTCTAGAAGGTTCCTACACTCCTCATACCTACATCGAACAAATTCAACTTGAAAAGCTTGTGAATGAAGTTATGGCCCTTCCAGATGATTTGAGGACAAAGCTCAGCCTAGATGAGGATTTGGTGTCAAGTCCCAAAGAAGCACTTTCTAGAGTCTCTGCCAATATGAGAAATAAAAATATGAGGAGTGGAATGTCACAGTCATATACAAATCAAAGGGACAAAAATCTAGCCAAAGTTACTGATTATGTTGCCAAAAATAGAGGGTTTGGTGAAAGAAATTCAGATTCTTCCACAAGATCAGCAAATCAGGGGGCCATAAATCAGCTCTCAGAACAAATTTCTGCCCTCAGTGATAGAATGGATGAGTTCACAAATCATATTGAAGAACTGAACTCTAAGTTAACCATCAACAAAAATTCTCCAAGCCATCAAAATATGTCAGTTCAAGCTGAATCCTCCAATGGTTCTGCTCCCACATCTTACTTCATCACAAGCTTGGGCAATGGTTCCTTAACTGGATCTAAAATGCCAAATTCCTCATCATCGTCGCAATTGGCTAAAGATTCTCCTTTCATCGATGAGATAGCTGGTATTACACGCGGTCAACGACAGATAATGCATCAGTTGGACAATCTCGGTAATCTTCTCCGCGGAAGCTTGGGAGAGAAGCCACAGCAAGAAAGAACCAACAACAGAAAAAACATAGCTACTGATTTAGATCCCACCAGAACTCATGTTATGGTGGCTATGGCACTTGGTTGTTTGGGTATCATCTTGATGAAGAGATTGTGGACAAGAAATTGA 1986 0.4023 MGKDTSNAESHHTRLGLLKDQVHLVKRKDSDRYEIASIKYQLSFEKGFFVVIRACQMLAQKNDGIILVGVAGPSGAGKTVFTEKILSFMPSIAVISMDNYNDSSRIVDGNYDDPRLTDYDTLLQNLHDLKEGKPTQVPIYDFKSSSRTGYRTVEPPSSEVVIIEGIYALSEKLQSLLDLRVSVTGGVHLDLVKRVIRDIQRAGQEPEEIIHQISETVYPMYKAYIEPDLQTAHIKITNKFNPFIGFQSPTYILKSTRSLTADQIKSLLSEGFKETTEQIYDIYLLPPGEDPKTCQSYLRMQNKEGKYSLMFEEWVKDSPFVISPRITFEVSVRLLGGLMALGYTIATIAKRNSHVFSDDSICVKLDWLEQLNRHYIQVQGRDRLVVKCIGEQLGLEGSYTPHTYIEQIQLEKLVNEVMALPDDLRTKLSLDEDLVSSPKEALSRVSANMRNKNMRSGMSQSYTNQRDKNLAKVTDYVAKNRGFGERNSDSSTRSANQGAINQLSEQISALSDRMDEFTNHIEELNSKLTINKNSPSHQNMSVQAESSNGSAPTSYFITSLGNGSLTGSKMPNSSSSSQLAKDSPFIDEIAGITRGQRQIMHQLDNLGNLLRGSLGEKPQQERTNNRKNIATDLDPTRTHVMVAMALGCLGIILMKRLWTRN 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0960 661 Pfam Phosphoribulokinase / Uridine kinase family 68 236 IPR006083 GO:0005524|GO:0016301
Lal18g0960 661 MobiDBLite consensus disorder prediction 531 550 - -
Lal18g0960 661 Gene3D - 66 246 IPR027417 -
Lal18g0960 661 CDD UMPK_like 67 239 - -
Lal18g0960 661 Pfam CYTH domain 268 394 IPR023577 -
Lal18g0960 661 PANTHER URIDINE KINASE 5 649 - -
Lal18g0960 661 PRINTS Uridine kinase signature 65 82 - -
Lal18g0960 661 PRINTS Uridine kinase signature 132 147 - -
Lal18g0960 661 PRINTS Uridine kinase signature 188 198 - -
Lal18g0960 661 PRINTS Uridine kinase signature 224 237 - -
Lal18g0960 661 SUPERFAMILY CYTH-like phosphatases 262 407 IPR033469 -
Lal18g0960 661 Coils Coil 500 527 - -
Lal18g0960 661 PANTHER PHOSPHORIBULOKINASE/URIDINE KINASE-LIKE PROTEIN 5 649 - -
Lal18g0960 661 ProSiteProfiles CYTH domain profile. 248 410 IPR023577 -
Lal18g0960 661 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 238 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0960 Lal-Chr18 12518158 12524819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0960 66 236 PRT Gene Family AT5G40870 26.111 4.39e-17 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0960 K00876 - gmx:100781286 1078.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0960 18 12518158 12524819 Lal18g0960 18 12518158 12524819 ECH