Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0957 ATGGGTGAAAAGGAAAAGTTAGAGCTTGATAGAAATCAGGATCCTATGAGTTATTCAAGTGCTATGAACTTGGATTGGAGATTTGGGGGTGCCGATCTTCCGAATTCGTCTGTGGGTTTGGTTGCCATGGGGAATTCTATGAATGTTAGCAGAGGGGATCTTATTGGTTCTTCTTCATGTTCCTCTGCCTCGATGGTGGATTCATTTGGTCCAAACTTTTGGGACCGTGTACCCAATTCCCAAAACATGGGATTTTGTGACATTAATAACGTCGGTAACAATGGAAGCTCTTCAAACAGAATTGGATTTGGAAGATGTGGTCACGATCATGGATCACTTGAAATGGGTTGGAACCCGGCTAACCCTTTGTTGAAGGGGGATGGTTTTATACCAAATGGGTGGGGGATGTTTCCACAGAGTTTATCTCAGTTTTCAACTGACTCTGGATTTATTGAGCAGTCTGCGAGATTCTCTTGCTTCGGTGGAGGGAATTTTGGTGAAACGCTGAACTCATATGGGGTTCCTCAATCCATTAGTCTGTATGCTGGGCCTGGTGCTGGTACAATGCATGGAACAAGAAATGCTCTTGCAGGCCATGGATTAAAATCAGCTCCTGGAGAACAATCTCAAGAAACCGATCTGAATCTGGTTGAAGCTGCAAACGATGTGTCTCCATGTGTCGAGCATTTGGCTACTAAAGGAAGTCCACTCAAGAATGATAAAATAAGCGAAAGTTATGGTATATCTCAAGATGAAGGGAAACAAGCTCTTGTTAGGCCTGCTAATGAGTCTGATAGAGCTGAATCTAGTGACGGCGATGGTGGTGGCCAGGAGGGTTCCACAATGTTGGAGGGTACTAGTGGGGAACCTTCTGATAAAGGACTGAACTCAAAGAAAAGGATAAGAAGTGGGAAGGATGTGGATGACGATAAGGGAAACGGAGCTACAGAAGTGGCCGGTGAAGGTGTAAAAGACAACTCTGAGAGTCCACAGAAGGGAGACCAACAACCAACTTCAGCAACGAAAGCTTCTGGGAAGAATGCCAAAGAAGCTTCTCAAGCTTCTGATCCACCTAAGGAGGAATTCATACACGTTAGGGCTCGCCGGGGTCAAGCAACAAATAGCCACAGCCTTGCAGAGAGAGTGAGGAGAGAAAAGATAAGTGATAGGATGAAGTTCCTTCAAGATCTTGTACCTGGATGCAACAAGGTCACCGGCAAGGCAGTGATGTTAGATGAAATCATTAACTATGTACAGTCACTTCAACGGCAGGTTGAGTTTTTGTCTATGAAACTTGCAACAGTAAATCAACGGATGGATTTTAATGTTGAAGGACTTCTTGCTAAAGATATTCTTCACCGGCGGCCTGGTCCTTCATCAGCCCTGGGGTTTCCTCTAGAAATGTCTATGGCTTACCCTCAATTACATCCATCTCAACCAGGACGGATTCACTCACCTCTTCCTAGTACGGAAAACACATTCACCGACAGATGGTACCCTTGA 1503 0.4491 MGEKEKLELDRNQDPMSYSSAMNLDWRFGGADLPNSSVGLVAMGNSMNVSRGDLIGSSSCSSASMVDSFGPNFWDRVPNSQNMGFCDINNVGNNGSSSNRIGFGRCGHDHGSLEMGWNPANPLLKGDGFIPNGWGMFPQSLSQFSTDSGFIEQSARFSCFGGGNFGETLNSYGVPQSISLYAGPGAGTMHGTRNALAGHGLKSAPGEQSQETDLNLVEAANDVSPCVEHLATKGSPLKNDKISESYGISQDEGKQALVRPANESDRAESSDGDGGGQEGSTMLEGTSGEPSDKGLNSKKRIRSGKDVDDDKGNGATEVAGEGVKDNSESPQKGDQQPTSATKASGKNAKEASQASDPPKEEFIHVRARRGQATNSHSLAERVRREKISDRMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNQRMDFNVEGLLAKDILHRRPGPSSALGFPLEMSMAYPQLHPSQPGRIHSPLPSTENTFTDRWYP 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0957 500 MobiDBLite consensus disorder prediction 233 360 - -
Lal18g0957 500 MobiDBLite consensus disorder prediction 258 272 - -
Lal18g0957 500 CDD bHLH_AtBPE_like 361 446 - -
Lal18g0957 500 Coils Coil 418 438 - -
Lal18g0957 500 MobiDBLite consensus disorder prediction 483 500 - -
Lal18g0957 500 Pfam Helix-loop-helix DNA-binding domain 374 422 IPR011598 GO:0046983
Lal18g0957 500 Gene3D - 368 443 IPR036638 GO:0046983
Lal18g0957 500 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 10 492 IPR024097 GO:0006355
Lal18g0957 500 PANTHER BHLH TRANSCRIPTION FACTOR 10 492 - -
Lal18g0957 500 MobiDBLite consensus disorder prediction 293 315 - -
Lal18g0957 500 MobiDBLite consensus disorder prediction 475 500 - -
Lal18g0957 500 MobiDBLite consensus disorder prediction 329 351 - -
Lal18g0957 500 MobiDBLite consensus disorder prediction 192 211 - -
Lal18g0957 500 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 369 441 IPR036638 GO:0046983
Lal18g0957 500 MobiDBLite consensus disorder prediction 274 292 - -
Lal18g0957 500 SMART finulus 377 427 IPR011598 GO:0046983
Lal18g0957 500 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 371 421 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0957 Lal-Chr18 12452299 12456428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0957 56 475 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 47.406 4.89e-104 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal18g0957 HLH 2.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0957 - - lang:109340340 777.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0957 18 12452299 12456428 Lal18g0957 18 12452299 12456428 ECH