Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0939 ATGGAATCTTGGAGCCATGTTGAAGAAGAGAAAGGCTATTTGTTTTCTGATGAAATGGATTTTTCACTTGATGCTTTTATGAGAAGTAGAAAAACATTGGTTGAATGGGACAACAAAGGGTCATGTAACTTTGAGGGAGATGGATTTGCTTCTGACAAAGAGGTAGTTTTGGAATTTGTTGCAAAAGAAGGACAACAAAGTATGGAATTTGTGGACTTGGGATTTCCCGACTTGATCCGAAAGTCCTTTAATTGTGGCCAGACTCATGAGATATCTAGCTGTGACTTAGATAGTAATTCTAGTAAAAAAGGGAATTCATCCACCCATGTTATTGCTTTGGTTCCGTCTTTGGGGGAAGAAGTATCCGAATCAAAGCATTTAAGTTCGCTAGTTGAATCCGAAGCTCATGGCTCTTCGTTGATCGATTTGAAGCTAGGGAGGTTAGCAGATAGCCAAGGTGCAAGCAATGATAAAATTGCAGAAGAAGGGTTTACTTTATCATCTATACATCCAACCATGCTCACAAAGAGAGCTCGCATCTCAAGCTCGCCTATTCAGGCTCCCGTATGTCAAGTTTATGGTTGTAACATCGATCTTAGCTCCTCAAAAGAGTACCACAAGAGGCATAAAGTTTGTGATGTTCACTCTAAAACAGCTAAAGTTATTGTTAATGGCATTGAACAGAGGTTTTGTCAGCAGTGCAGCAGGTTCCATTTGCTAGCTGAATTTGATGATGGGAAACGCAGTTGTCGCAGGCGTCTAGCTGGACATAATGAACGCCGAAGGAAACAACAGTTTGATTGCATGTCTGGTAAACAACACAAGATTCATCAGTCATTTCAAGGTACCGAGTATTTGGGGTCTTCGTCACCGAAAAGATCACAGTTTCCCTTTCAAGACATATTTCGGAGTGGCATCCTTTTCTCAGGAAAGTATGACCAAATCTCTCATAGTGGACATGTCAAATTGGAACATGAATCAATCTACAGTTCTCAAGAAGCAGTAACTTTAACACATGGTCAGGAGCTATCAGGCTGTGCTCTCTCTCTTCTGTCAGCTCAGTCACAGAATCCGTCGCGCTATTCAGCCGGAAATCTATCACCTAGTTCCCTTATTTCTCAGGGTATTTGCTTGCAAAACAGAGATGATCAAGTTTCTAAGGAAGACATAAAAAGTGGACCATCAATACTTTCTGATGATTATTGCCAACCATCAGCCTTATGTGATGTCAAATATCGTCCTTCCTATGAATGTGGAACAACGGTCGATCTGTTCCAATTGTCGTCAAATCTTCAAAGGGTGGAGCAGCAAAGAAATTGTTTGATAAAATGGGAAAATGATGATTGCTATTTCCCAACTGTGTAA 1365 0.4066 MESWSHVEEEKGYLFSDEMDFSLDAFMRSRKTLVEWDNKGSCNFEGDGFASDKEVVLEFVAKEGQQSMEFVDLGFPDLIRKSFNCGQTHEISSCDLDSNSSKKGNSSTHVIALVPSLGEEVSESKHLSSLVESEAHGSSLIDLKLGRLADSQGASNDKIAEEGFTLSSIHPTMLTKRARISSSPIQAPVCQVYGCNIDLSSSKEYHKRHKVCDVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRRRLAGHNERRRKQQFDCMSGKQHKIHQSFQGTEYLGSSSPKRSQFPFQDIFRSGILFSGKYDQISHSGHVKLEHESIYSSQEAVTLTHGQELSGCALSLLSAQSQNPSRYSAGNLSPSSLISQGICLQNRDDQVSKEDIKSGPSILSDDYCQPSALCDVKYRPSYECGTTVDLFQLSSNLQRVEQQRNCLIKWENDDCYFPTV 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0939 454 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 59 391 IPR044817 GO:0003677
Lal18g0939 454 ProSiteProfiles Zinc finger SBP-type profile. 187 264 IPR004333 GO:0003677
Lal18g0939 454 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 59 391 - -
Lal18g0939 454 Gene3D - 181 251 IPR036893 GO:0003677|GO:0005634
Lal18g0939 454 Pfam SBP domain 190 264 IPR004333 GO:0003677
Lal18g0939 454 SUPERFAMILY SBT domain 188 269 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0939 Lal-Chr18 12224514 12229257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0939 95 452 SBP-box Gene Family AT1G69170 40.464 4.56e-58 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lal18g0939 SBP 2.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0939 - - gmx:100820149 591.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0939 18 12224514 12229257 Lal18g0939 18 12224514 12229257 ECH