Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0889 ATGGCATCTGAGGCAGAGGTTTCTGAAATCACCTCTTTGTTTGAAAGGTTAGTGAGAAACAGAGACATGTCTTTGTTCTTGCCTTTCATATTTGGCTTCTCAGAATCATCATCAAGGGGAAATAGTGAAGACCCAGATCAGGAAACTGAGGATACTGAAGGTTCCCATAGTCAAAGAATAATCTTGGTGAACCCTTTTACACAGGGCATGGTGGTGATTGATGGTGCTTCAAGCCTTGAGAATTTGTTTCATGAACTAGGAAGTAGCAAAGGTGGACACCCACCAGCTTCAAAAGAATCAATTGAGGCCATTCCAAATGTGGAAATTGGAGAAAGTGAAGATCTTGGGGAGTGTGTGGTTTGTTTGGAAGAATTTGAGGTTGGTGGGGTGGCAAAAGTTATGCCTTGTAAGCATAAATTTCACTCCAATTGCATTGAAAAGTGGCTTGGGGTTCATGGGAATTGCCCTGTTTGTAGGTATGAGATGCCTGTTGAGGAGAAAGATGGTGGCAGGAAAAGTGAGGAGGAAGGTGGTGAGAGAAGGAGGATTGGTGGTGGTGGTGGTGGTGGTAGTGGTGGTGGTGGTGGTGGTGGTGAAGTTTGGGTTAGTTTTTCTATTAATAGAGGTAGAAGAAATCAAGCTCTTTCTGGTGATTCTAGTGATAATTCTTCAAGTCCTAGTGGTGATGCTGAGGTAGAGAATTAG 705 0.434 MASEAEVSEITSLFERLVRNRDMSLFLPFIFGFSESSSRGNSEDPDQETEDTEGSHSQRIILVNPFTQGMVVIDGASSLENLFHELGSSKGGHPPASKESIEAIPNVEIGESEDLGECVVCLEEFEVGGVAKVMPCKHKFHSNCIEKWLGVHGNCPVCRYEMPVEEKDGGRKSEEEGGERRRIGGGGGGGSGGGGGGGEVWVSFSINRGRRNQALSGDSSDNSSSPSGDAEVEN 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0889 234 SUPERFAMILY RING/U-box 108 164 - -
Lal18g0889 234 MobiDBLite consensus disorder prediction 36 57 - -
Lal18g0889 234 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 9 173 - -
Lal18g0889 234 MobiDBLite consensus disorder prediction 41 55 - -
Lal18g0889 234 Pfam Ring finger domain 117 159 IPR001841 -
Lal18g0889 234 MobiDBLite consensus disorder prediction 165 182 - -
Lal18g0889 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 165 IPR013083 -
Lal18g0889 234 ProSiteProfiles Zinc finger RING-type profile. 118 159 IPR001841 -
Lal18g0889 234 MobiDBLite consensus disorder prediction 165 234 - -
Lal18g0889 234 CDD RING-H2_PA-TM-RING 117 159 - -
Lal18g0889 234 MobiDBLite consensus disorder prediction 206 234 - -
Lal18g0889 234 PANTHER - 9 173 - -
Lal18g0889 234 SMART ring_2 118 158 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0889 Lal-Chr18 11484991 11485695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0889 1 223 C3H Transcription Factor Family AT1G26800 46.696 3.01e-60 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0889 - - lang:109356689 312.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0889 18 11484991 11485695 Lal18g0889 18 11484991 11485695 ECH