Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0887 ATGAGCGATCATTTGGTGCTCGTCGTTGACCGTCTCATGCACCCTGTCCCCGTTGACGCCGTCGCGCAACCCTCTCAGCTCCGTTCCGATCCTTTGCCCTCACCGCCGCCGGTGAATCATGCCGATGGAGGTGGGTCGGAGCATGGTGAGGGTGGCGATGAGGAGGAGCCGCTGATCCAGATGGCGGAGTGCCGCATTTGTCAGGAGGAGGACGGAGTTTCCAATTTGGAGAGCCCCTGCGCCTGCAGCGGCAGTCTCAAGTATGCTCACAGAAAGTGTGTCCAGCATTGGTGCAATGAGAAAGGAGACATTACTTGTGAGATATGTCATCAGCCTTATCAATCTGGTTATACTGCCCCACCACCTCGTCCTAATCCTGATGAAACTACCATTGATATTGGAGGAGGCTGGACAATATCTGGCACACCTTTGGACTTGCGTGATCCTCGACTCTTGGCGATAGCAGAGGCAGAACGCCAATTCTTGGATGCTGAATATGATGAATATGCTGCTTCTAATGCGAGCGGAGCTGCATTTTGCCGCTCAGTTGCTCTAATTTTAATGGCCCTTTTACTCTTGCGCCATGGACTCTCTTCCACAGATGGTGATGCTCCTGATGATGATCCATCCAATTTTTTCTCTCTTTTCTTGCTTCGAGCTGCTGGATTTCTTTTACCTTGCTATATTATGGCTTGGGCAATCAGTATCCTGCAACGTCGGCGACAAAGACAAGAGGCTGAATCTCTAGCAGCAACACAAGTTGCCTATGTTCTACAATCAGCGCAGCGTAGGGGTGTGCAATTTGCAATAGCACCAGGACCCACAGTGCACCCGGAACAAGTGTAG 846 0.5142 MSDHLVLVVDRLMHPVPVDAVAQPSQLRSDPLPSPPPVNHADGGGSEHGEGGDEEEPLIQMAECRICQEEDGVSNLESPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQPYQSGYTAPPPRPNPDETTIDIGGGWTISGTPLDLRDPRLLAIAEAERQFLDAEYDEYAASNASGAAFCRSVALILMALLLLRHGLSSTDGDAPDDDPSNFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAESLAATQVAYVLQSAQRRGVQFAIAPGPTVHPEQV 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0887 281 CDD RING_CH-C4HC3_MARCH 64 110 - -
Lal18g0887 281 Pfam RING-variant domain 64 109 IPR011016 GO:0008270
Lal18g0887 281 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 272 IPR033275 -
Lal18g0887 281 Coils Coil 152 172 - -
Lal18g0887 281 MobiDBLite consensus disorder prediction 25 55 - -
Lal18g0887 281 Pfam Protein of unknown function (DUF3675) 116 234 IPR022143 -
Lal18g0887 281 ProSiteProfiles Zinc finger RING-CH-type profile. 56 116 IPR011016 GO:0008270
Lal18g0887 281 SMART ringv_2 63 110 IPR011016 GO:0008270
Lal18g0887 281 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 272 - -
Lal18g0887 281 SUPERFAMILY RING/U-box 62 114 - -
Lal18g0887 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 120 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0887 Lal-Chr18 11454203 11458509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0887 63 139 C3H Transcription Factor Family AT2G37950 35.955 5.10e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0887 - - lang:109359054 489.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0887 18 11454203 11458509 Lal18g0887 18 11454203 11458509 ECH