Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0861 ATGCAAGATATGAAGAAGAATCAGCAGAAACATGTGGTGGCCAATGAAGATTTTGAGAAGAAGGAGCGTAGGCACATTGTAACATGGACTAAAGAGGAGGATGATATATTAAGGAAACAGATTGGTACTTATGGAACTGTAAATTGGGCAATTATTGCTTCTAAATTCAAGGACAAAACTACAAGGCAGTGCAGAAGAAGATGGTACACTTATTTGAATTCTGATTTCAAGAAAGGAGGATGGTCACATGAGGAAGACAAGCTCTTATGTGAGGCTCAAAAAATATTTGGTAATAGATGGACAGAAATAGCAAAGGTGGTTTCAGGCAGAACGGACAATGCTGTGAAAAACCGTTTTTCCACATTGTGCAAAAAGAAAGCAAAATATGAAGCCTTGACAAAAGAGAACAACTCTTCATTCATCAATTCAAATAACAAGAGGGTTATTTTACAACATGAGTATAATACCAATGCAGTATCAGAGTCTGCAGTAGCTAATAAGAAGATTAGGAGATCCCATATCCCTGATGATAGTGCAGAAAAAATCAGTTTCGGTGGCAAATCACATAAACAGAACGGAACTGCATTAAATCAGCAACCAAGAATACCATTTGCAGTGTTACCTCAAAACTCTCATAATTTGAACATCTTGTCAAGTCAGCATCATGTCTACAATGCAAAGTTTAGTAGTTATGCCCAAAACAAGATTCAAGGAACATTCCTTAAAAAGGATGACCCGAAGATAAGTGCATTGATGCAACAAGCAGAATTACTAAGTTCACTGGCTCTAAAAGTTGATGCAAAGAACATGGACCAAAGTCTTGAAAATGCATGGAAGGTTCTTCAAGAATTTCTAAACCAAACCAAAAAATCAGACATTTCCACATATAAGATTCCAGATTTACAGCTTGTAGATCTTAAAGATTTGTTGGAGGACTTTAAGGGTAGTAGTGATGGGATCCAACCATGTTGGAGGCAAATGGAACTATATGAAGACTCTCCAGGCAGTTCTGAATATAGTACAGGATCAACTCTTCTGCCTAATTCAGCATGTGAGAATTTGGAAAACTCGTGGCATCAAGAAATTGGAACTGAACCGAAGTCTATTCAAATTGGAGATGAAGATGAAGGAGTTAGAGGGTGTGACCAAGGGGTTCTTTCTAGTCCAACATTGAATCAAGTTATATTTCCTTCTTGTGAGGAGCAGACAGACAATGATGGCATTGCTTCTGCCTTATCAAGTGCAGGTTTCAATTCCCCTCTTCAAGTCACCCCTCTGTTCAGATCCTTAACTACAGGAATTCCTAGTCCACAATTTTCAGAAAGTTTGTGTTTACTACAATTGCGGGAAAATGTTGCCGATGCGACTGTAATTGTGGCCACGATGTTGTTTTGGAGACTCCTGAGACGGCAACATTGTGGTTTCGGAATGCAATTTAAAACACTGCTGCATAGTATAGGTTTTTTTAAAGCTTCTCTTATAGATTTTGTAGCCTACACCTTGCTTGAGGAAGGAAAGGAATTTCCTTATGAAAACACTTGGAATGGAGTCTCCATCCCTCAACCGAAGTGCCAACACCTCACAGCCACCACACTGCAAAAGAATCCTACTACATAG 1617 0.3878 MQDMKKNQQKHVVANEDFEKKERRHIVTWTKEEDDILRKQIGTYGTVNWAIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSHEEDKLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKKAKYEALTKENNSSFINSNNKRVILQHEYNTNAVSESAVANKKIRRSHIPDDSAEKISFGGKSHKQNGTALNQQPRIPFAVLPQNSHNLNILSSQHHVYNAKFSSYAQNKIQGTFLKKDDPKISALMQQAELLSSLALKVDAKNMDQSLENAWKVLQEFLNQTKKSDISTYKIPDLQLVDLKDLLEDFKGSSDGIQPCWRQMELYEDSPGSSEYSTGSTLLPNSACENLENSWHQEIGTEPKSIQIGDEDEGVRGCDQGVLSSPTLNQVIFPSCEEQTDNDGIASALSSAGFNSPLQVTPLFRSLTTGIPSPQFSESLCLLQLRENVADATVIVATMLFWRLLRRQHCGFGMQFKTLLHSIGFFKASLIDFVAYTLLEEGKEFPYENTWNGVSIPQPKCQHLTATTLQKNPTT 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0861 538 PANTHER TRANSCRIPTION FACTOR MYB88 10 442 - -
Lal18g0861 538 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 72 IPR017930 -
Lal18g0861 538 CDD SANT 81 122 IPR001005 -
Lal18g0861 538 Gene3D - 19 77 - -
Lal18g0861 538 Gene3D - 80 152 - -
Lal18g0861 538 PANTHER MYB PROTEIN-RELATED 10 442 - -
Lal18g0861 538 CDD SANT 28 72 IPR001005 -
Lal18g0861 538 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 73 127 IPR017930 -
Lal18g0861 538 ProSiteProfiles Myb-like domain profile. 73 123 IPR001005 -
Lal18g0861 538 SUPERFAMILY Homeodomain-like 51 134 IPR009057 -
Lal18g0861 538 ProSiteProfiles Myb-like domain profile. 29 72 IPR001005 -
Lal18g0861 538 SMART sant 25 74 IPR001005 -
Lal18g0861 538 SMART sant 77 125 IPR001005 -
Lal18g0861 538 Pfam Myb-like DNA-binding domain 29 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0861 Lal-Chr18 11160971 11168547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0861 12 325 MYB Transcription Factor Family AT2G02820 59.248 6.65e-124 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal18g0861 Myb_DNA-bind_6 9.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0861 K09422 - gmx:100807667 666.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0861 18 11160971 11168547 Lal18g0861 18 11160971 11168547 ECH