Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0859 ATGGGTAACTGCTTAGATTCTTCTGCAAAAGTTGATGCAGCTCAAAGCTATAAAAGCACTTCTGCTGGGTATAAGTATTCAAATTCTTCAAAATATCTTACTCTCCCACCCAATGATTATGTTTTTGTTATTGTTAAACTCCCCCTTTGGCTTGTGCTGTGGCATCATTATATAGGGGCTAATTTTTTTGTTCTGTCAGCATCAGGAATCTCAAAAAGTACTCCTTCAAGCTTATCTATTCAATCATACAGTGAAAAAAGCAATTCCTCAACAAGTCTTTCCACACCAAGGTCTGAGGGTGAAATCTTGTCTTCTCCCAATCTTAAGGCCTTCTCATTCAATGAGCTGAAGAATGCCACCAGAAATTTTCGTCCCGACAGTGTTCTTGGTGAAGGGGGATTTGGTTATGTTTACAAGGGATGGATTGATCCAAACACATTTACAGCTGCAAAACCTGGATCAGGAATGGTTGTTGCTGTAAAGAGGCTTAAGCCTGAAGGATTCCAAGGTCATAAAGAGTGGCTGACTGAGGTTAACTACCTTGGACAACTGCATCATCGTAATCTGGTTAAACTAATTGGTTACTGCTTGGAGGGAGAGAACCGGCTATTGGTCTATGAGTTTATGCCCAAAGGGAGCTTAGAGAACCATCTATTTAGAAGAGGACCGCAACCACTGCCATGGTCAGTGAGGATGAAAGTAGCCATTGGTGCTGCCATAGGACTCTCTTTTCTTCATAATGCCAAATCACAAGTCATATACCGTGATTTTAAAGCTTCGAACATCCTACTGGATGCTGATTTCAATGCTAAGCTCTCTGATTTTGGCTTAGCTAAGGCGGGTCCTACTGGTGACAGAACTCATGTGTCTACTCAAGTCATGGGTACCAAAGGATATGCAGCACCTGAATATGTGGCAACTGGTCGACTCACAGCGAAAAGTGATGTATACAGCTTTGGGGTTGTGTTGCTTGAACTTTTGTCTGGAAGACGCGCTGTTGATAAAACAATGGCCGGTGTGGAGCATAATCTGGTAGACTGGGCAAAACCATATTTAGGCGATAAACGAAAACTATTCCGAATCATGGATACCAAGTTGGAGGGCCAATACCCACAAAAAGGAGCCTTCATGGCTGCTACCCTTGCTCTACAATGCCTTAACAGTGAAGCGAAGGCAAGGCCTCCAATGACAGATGTTTTGGCAACTCTGGAACAAATAGAAGCCCCCAAAACTGCAGGCCGAAATTCCCATTTGGAATATCCGAGAGGAGTCCACACTCCTGGAAGAAGATCTCCGGTGCCAAACCGGTCTCCTATGCATCTGACTCCAATTGCGTCCCCGGTGTCAAACCGGTCTCCTATGCATCTGACTCCAATTGCATCCCCACTACGGTCTCACGGGCAATCTGCTCGTGTGCACTAA 1422 0.4437 MGNCLDSSAKVDAAQSYKSTSAGYKYSNSSKYLTLPPNDYVFVIVKLPLWLVLWHHYIGANFFVLSASGISKSTPSSLSIQSYSEKSNSSTSLSTPRSEGEILSSPNLKAFSFNELKNATRNFRPDSVLGEGGFGYVYKGWIDPNTFTAAKPGSGMVVAVKRLKPEGFQGHKEWLTEVNYLGQLHHRNLVKLIGYCLEGENRLLVYEFMPKGSLENHLFRRGPQPLPWSVRMKVAIGAAIGLSFLHNAKSQVIYRDFKASNILLDADFNAKLSDFGLAKAGPTGDRTHVSTQVMGTKGYAAPEYVATGRLTAKSDVYSFGVVLLELLSGRRAVDKTMAGVEHNLVDWAKPYLGDKRKLFRIMDTKLEGQYPQKGAFMAATLALQCLNSEAKARPPMTDVLATLEQIEAPKTAGRNSHLEYPRGVHTPGRRSPVPNRSPMHLTPIASPVSNRSPMHLTPIASPLRSHGQSARVH 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0859 473 MobiDBLite consensus disorder prediction 442 456 - -
Lal18g0859 473 PANTHER OS01G0588500 PROTEIN-RELATED 71 451 - -
Lal18g0859 473 Gene3D Phosphorylase Kinase; domain 1 98 208 - -
Lal18g0859 473 MobiDBLite consensus disorder prediction 410 473 - -
Lal18g0859 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Lal18g0859 473 Pfam Protein tyrosine and serine/threonine kinase 127 402 IPR001245 GO:0004672|GO:0006468
Lal18g0859 473 MobiDBLite consensus disorder prediction 80 101 - -
Lal18g0859 473 SUPERFAMILY Protein kinase-like (PK-like) 92 403 IPR011009 -
Lal18g0859 473 ProSiteProfiles Protein kinase domain profile. 123 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal18g0859 473 ProSitePatterns Protein kinases ATP-binding region signature. 129 161 IPR017441 GO:0005524
Lal18g0859 473 Gene3D Transferase(Phosphotransferase) domain 1 209 420 - -
Lal18g0859 473 PANTHER PROTEIN KINASE 2B, CHLOROPLASTIC 71 451 - -
Lal18g0859 473 CDD STKc_IRAK 129 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0859 Lal-Chr18 11149484 11152986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0859 98 403 Glycoside Hydrolase AT3G07070 52.751 1.08e-110 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lal18g0859 PK_Tyr_Ser-Thr 5.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0859 - - gmx:100809778 684.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0859 18 11149484 11152986 Lal18g0859 18 11149484 11152986 ECH
Lal18g0859 18 11149484 11152986 Lal13g1830 13 17757446 17763312 ECH