Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0854 ATGATGGGGAAAGGAAGAAGTCCTGGGAAATGGTTCAAGAACTTACTCTTGGGGAAGAAATCATCATCGAAGTCTAAATCATCGAAGAAGGATGATATTTTCAAACCTTCGAATAACATGGATGTGGTGCGGTCTTCTGATGTAAACATGTCTGATTCAACTGTGGATTCTTTGGTGATATCGTCACCAATTCCTGGAGCTAATGCTACTAAAGTAGTGCTTTCGGAAAAGGAAGTAATTACTAGGTCATCAGATGTCAAGGATATTATTTCAGCTCGGGATGAAGAGGCTCATGCACAAGCTGTCACTAATTTTCGATATCAGGAGGATCTTGAGAAACTCAGGCTTACAGAAGCAGCTATAGCAGTTCAGTCTGCTTGTCGGGGCTATCAGGCTCGTCTGACATTCCAAACACACAAAGGTATCATACAACTGCAAGCTCTTATTCGTGGCCACTTGGTTAGAAGACAAGCTGTTTCTGCTTTATACTGTGTGAAGGGAATAGTTAAACTTCAAGCATTGGTTCGTGGTTACAATGTTAGGCATTCTGATGTTGGGCTTGCAGTCCTGAAAATTCGTAAGGACACTAAATATTCAAATTCCATTGGAGTGGTCACAACAACACAGGCAGATAAGCTGTTCAATAGTGTCTTTGCTCGCAAGCTTTTGGCTTCATCTTCCCCCGAAGTTCCTCTATCTTTCAGATTTGATCCTATTGGTCCTAACCTGGCTAATGAGTGGCTTTTCCACTGGACAAGATCACGCTTTTGGGCACCTCTTCCAGAATTGAAGAAGAAACTTTACTCTCTGTCTGATGAAAAAAATGGCAGTTGCCGAACAGTTGATCAGGGACATGTTAAAAGAAATACCCGAAAATCTCCTTCTGTAAAAGCTGATGATGGATCAGGTTCTGGTTCTAGCAAATATAAACAGCCTCCCAAAAAGGATTCAAACCGTCCATTGCTTTCAGCTCAGGAACATCCACAAAAGGAAATCGAGAAAAGTAGTTCTGTTAAAACTCGAGTGCAGACTGTTTCAGATAGATCTGAGGTTGTTAATGAGAAAAGAAAACACCGCACTAGAAAAATTTCAGATCATACTGTCACCAATGTTTCAAAGTTGTGCTCAAGTGCCTCCTCAGAGAAAAGGAAAGATTTGGCAGTGTCAAAATCAAAGACGTCTGATCCTGAGAAAATTCTTCGACAACAAATGGAAGACAAGCATGATAATGAGCCACCGAATGATCCTATTGCTGTCTTGAACGGTAGTGTGATTAAAGATATTGATGAAGAAACAAGAAAAATTTCAAATCATACTGTCTCTGAGGTTTCAAAGCTGGATCAAAGTGCTTCTTCAGAGAAAATAAAAGATTTTGCAGTGTCAAAGTCAAAAGAGTCTGATCCTAAGCCGGTTAATGCTGTCGTGGAGACTAGTGTGATGAATGGTAGAGATGAAGGAATTCGAAGAGTTAGTGATGACCTGAATGATGGTGACAGTTGTATCAGAAACAATTACCAGAGAAGAGCTTCACTACCTGCTAATTTTAATGATCAAGATAATGAGTTACATAACACACCAAGACTGCCCAGTTATATGGCTCCTACCGAATCTGCAAAAGCTAGGCTAAGAGGACAAGGCTCTCCGAGGCTGGCTTCTGATTTGATAGACAAAAATGGTATAACGAGGCGACATTCACTTTCATCTTCGATGAATGGAAAGCCGGATTCATTTTCCCCAATAGCAGAAAGACTGGTGGCTATGAGTGGCAGAGGAGTGATACGGTCTGATAGATCTCTATCTTCTTCAAGGGATGGGAATGGGACTGATAAGTTGATGCAACCTCAATGGAGAAGGTGA 1857 0.4109 MMGKGRSPGKWFKNLLLGKKSSSKSKSSKKDDIFKPSNNMDVVRSSDVNMSDSTVDSLVISSPIPGANATKVVLSEKEVITRSSDVKDIISARDEEAHAQAVTNFRYQEDLEKLRLTEAAIAVQSACRGYQARLTFQTHKGIIQLQALIRGHLVRRQAVSALYCVKGIVKLQALVRGYNVRHSDVGLAVLKIRKDTKYSNSIGVVTTTQADKLFNSVFARKLLASSSPEVPLSFRFDPIGPNLANEWLFHWTRSRFWAPLPELKKKLYSLSDEKNGSCRTVDQGHVKRNTRKSPSVKADDGSGSGSSKYKQPPKKDSNRPLLSAQEHPQKEIEKSSSVKTRVQTVSDRSEVVNEKRKHRTRKISDHTVTNVSKLCSSASSEKRKDLAVSKSKTSDPEKILRQQMEDKHDNEPPNDPIAVLNGSVIKDIDEETRKISNHTVSEVSKLDQSASSEKIKDFAVSKSKESDPKPVNAVVETSVMNGRDEGIRRVSDDLNDGDSCIRNNYQRRASLPANFNDQDNELHNTPRLPSYMAPTESAKARLRGQGSPRLASDLIDKNGITRRHSLSSSMNGKPDSFSPIAERLVAMSGRGVIRSDRSLSSSRDGNGTDKLMQPQWRR 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0854 618 MobiDBLite consensus disorder prediction 1 40 - -
Lal18g0854 618 ProSiteProfiles IQ motif profile. 138 167 IPR000048 GO:0005515
Lal18g0854 618 SMART iq_5 115 137 IPR000048 GO:0005515
Lal18g0854 618 SMART iq_5 138 159 IPR000048 GO:0005515
Lal18g0854 618 ProSiteProfiles IQ motif profile. 116 144 IPR000048 GO:0005515
Lal18g0854 618 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 112 181 IPR027417 -
Lal18g0854 618 MobiDBLite consensus disorder prediction 278 398 - -
Lal18g0854 618 Pfam IQ calmodulin-binding motif 166 181 IPR000048 GO:0005515
Lal18g0854 618 Pfam IQ calmodulin-binding motif 117 136 IPR000048 GO:0005515
Lal18g0854 618 Pfam IQ calmodulin-binding motif 139 157 IPR000048 GO:0005515
Lal18g0854 618 MobiDBLite consensus disorder prediction 594 609 - -
Lal18g0854 618 MobiDBLite consensus disorder prediction 589 618 - -
Lal18g0854 618 MobiDBLite consensus disorder prediction 296 311 - -
Lal18g0854 618 Gene3D - 113 162 - -
Lal18g0854 618 Pfam Protein of unknown function (DUF4005) 518 595 IPR025064 -
Lal18g0854 618 MobiDBLite consensus disorder prediction 278 295 - -
Lal18g0854 618 PANTHER IQ-DOMAIN 5-RELATED 2 607 - -
Lal18g0854 618 MobiDBLite consensus disorder prediction 378 398 - -
Lal18g0854 618 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 2 607 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0854 Lal-Chr18 11066702 11072384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0854 5 618 IQD Protein Family AT1G14380 32.114 6.86e-72 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0854 - - lang:109357279 858.596
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0854 18 11066702 11072384 Lal18g0854 18 11066702 11072384 ECH
Lal18g0854 18 11066702 11072384 Lal19g1483 19 17285666 17291737 ECH