Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0849 ATGTTGCAGCCACACTCTTGTTCAGCTCCAACACAATCTTCTATTACAATCCCAAACCACACTTTCACTCCAAAGTTCATTCCTTTAAAACGTTCTTCTTCTATATCCACTTTCTCCTTTACTCTCCAACCACTCTCTATAAGATGCCGTCATCCTCAGTTCTATGAACCCAAACCATATCCCTCTTCCCCACAAGCACAACGTTCAACACCACCACCAGCTTCAGTTGGAGATTTTCCACCTAGGGTTTATGTGGGTCACTCAATTTACAAAGGGAAGGCTGCACTCACCGTCAATCCTAGACCTCCAGAATTTCAATCAACGGAATCTGGGGCATTCAAAATATCAAGGGAAGGTTATGTGCTGCTTCAGTTTGCTCCCGAAGCTGGTATGCGCCGATATGATTGGAACAAGAAACAGTGCAAGTTGAAAGAAAAGATGGTAGCATCGCGCCTTAGGTGGTTTGGACATGTGTGGAGAAGACCGATAGAAGCCTCTGTAAGGAGAGTAGAACAAATGGAGGCTAGTCCGACTCCTAGAGGAAGAGGAAGACCAAGAAAAACCATAAGTGAAATGATTAAGAAAGACTTAATTTTAGAGATCAATATAGTAAATTACAAAAAGGTTTTCTCGCTATCAATGACTGAAATGGGAGCTCTAATTAGCCTTGGTGCAAAGGAGTCTGTGGAATTTTATCATGATCCTTTTCAAGGCAAAAGTGACGAAGGTAAAGTAAGAAAAGTTTTGAGGGTGGAGCCACATATTGATGGTTCTGGTCACTTATTTAACCTCAGTGTTCAAAACACGCTTGAGAACATAGACGAAAAGATCTTCATTCCTATTACGAAGGCAGAGCTGACGTTTATCATGCCTTACCTTCTAGGTTGGCATATATTTGGAAATTCCATAAAGCCATATACTTCTGGTAGAGCTAATAATTCCAACCCAAAATATGGAGCAGATTCTGAATGGAACAGATAG 981 0.4128 MLQPHSCSAPTQSSITIPNHTFTPKFIPLKRSSSISTFSFTLQPLSIRCRHPQFYEPKPYPSSPQAQRSTPPPASVGDFPPRVYVGHSIYKGKAALTVNPRPPEFQSTESGAFKISREGYVLLQFAPEAGMRRYDWNKKQCKLKEKMVASRLRWFGHVWRRPIEASVRRVEQMEASPTPRGRGRPRKTISEMIKKDLILEINIVNYKKVFSLSMTEMGALISLGAKESVEFYHDPFQGKSDEGKVRKVLRVEPHIDGSGHLFNLSVQNTLENIDEKIFIPITKAELTFIMPYLLGWHIFGNSIKPYTSGRANNSNPKYGADSEWNR 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0849 326 SUPERFAMILY ssDNA-binding transcriptional regulator domain 81 140 IPR009044 GO:0003677|GO:0006355
Lal18g0849 326 Gene3D Transcriptional Coactivator Pc4; Chain A 77 154 IPR009044 GO:0003677|GO:0006355
Lal18g0849 326 Gene3D Transcriptional Coactivator Pc4; Chain A 201 313 IPR009044 GO:0003677|GO:0006355
Lal18g0849 326 MobiDBLite consensus disorder prediction 57 77 - -
Lal18g0849 326 Pfam Whirly transcription factor 206 289 IPR013742 GO:0003697|GO:0006355|GO:0006952
Lal18g0849 326 Pfam Whirly transcription factor 89 141 IPR013742 GO:0003697|GO:0006355|GO:0006952
Lal18g0849 326 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 29 326 IPR013742 GO:0003697|GO:0006355|GO:0006952
Lal18g0849 326 SUPERFAMILY ssDNA-binding transcriptional regulator domain 205 326 IPR009044 GO:0003677|GO:0006355
Lal18g0849 326 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 29 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0849 Lal-Chr18 11025026 11031477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0849 207 326 Whirly Transcription Factor Family AT1G14410 65.354 3.65e-56 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Lal18g0849 Whirly 1.1e-28 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0849 - - lang:109355868 226.483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0849 18 11025026 11031477 Lal18g0849 18 11025026 11031477 ECH