Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0844 ATGGAATTGGGATCGTGTGTGAAAGAAAATTCATTCAATGATCATTACTCTGTTTATGCACGAGAGGCGCTCGACGAATTGCCTCATAACTTTACCATCACTGACCCTTCAATCCCAGGCCACCCCATCATATTTGCCAGCCTGGGATTCCTGAATATGACAGGGTATACTAGGAAGGAGGTTGTTGGAAACAGCGGCGCCATGTTTCAGGGTCCCGGGACTTGTCGAAGAGCGGTTATGGAGATTCGAGAGGCTATAAGGGAAGAGAGGAAGACTCAGGTTGTTCTGTTGAATTATAGGAAGGATGGGACACCCTTTTGGATGTTGTTTCATATGAGCCCTGTTTTTACAGAACACTATGGTGGGGTGGTTCATTTTGTGGCAGTTCAAGTTCCCTTGCAGAAGAAAATGGATTATTGCGAAGATGGGTCCAGGTTGCAGCAGGATTATGTGTTTGGGTATTGTAGGAAGGAAGTTTGCTTGGACTCTGTGTTGGGACTTGGTCGTCTTTGTCCTATGGATCAACATGATGATGTTAGAGACTTAGAGAGTGAAGAGCCTTGTGAGGCAAGTGATGATGAGAAGAGAAGCGCTGTGACTGCTATGGACAATATCTTTTCTGTACTGACCCACTACAGCGAGTCAACGGGCAGATTGGTGTGTAGAAAGAGATGCAGCATGCCTGATGTGGGTCTTCTTAGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTAACTAATCCACATTTATTCGACATGCCTATTGTGTACGCCAGTGATGCTTTCTTGAAATTGACAGGTTATGCAAGCAATGAGGTGTTGGGCTGCAACTGTAGATTTTTAGGTGGAAAAAATACTGATACCTCAACTTTATATCTGATCAGGGAAAGCATTAAAACTGAACAACCATGCACAGTACGTATTCTGAATTACAGGAAGGATAAAAGCTCATTTTGGAATATTCTCCACATCTCACCAGTTCGTGATGCTTCTGGCAAGGTAGCTTACTTTGTGGGAGTTCAAATAGAAGAGGATCATAAAAACGGCGATAGACCGGGTTTGAGCCCTGAGAGAAGGCAGCTTAGTGTGGTTGGAGTAGTAAAGGTTGCTGTGAGGAGTTTATCTATGACTGCTGGATCCTCTAAGTCATAG 1167 0.437 MELGSCVKENSFNDHYSVYAREALDELPHNFTITDPSIPGHPIIFASLGFLNMTGYTRKEVVGNSGAMFQGPGTCRRAVMEIREAIREERKTQVVLLNYRKDGTPFWMLFHMSPVFTEHYGGVVHFVAVQVPLQKKMDYCEDGSRLQQDYVFGYCRKEVCLDSVLGLGRLCPMDQHDDVRDLESEEPCEASDDEKRSAVTAMDNIFSVLTHYSESTGRLVCRKRCSMPDVGLLSTSLIISLGRIKQSFVLTNPHLFDMPIVYASDAFLKLTGYASNEVLGCNCRFLGGKNTDTSTLYLIRESIKTEQPCTVRILNYRKDKSSFWNILHISPVRDASGKVAYFVGVQIEEDHKNGDRPGLSPERRQLSVVGVVKVAVRSLSMTAGSSKS 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0844 388 SMART pac_2 310 352 IPR001610 -
Lal18g0844 388 SMART pac_2 93 136 IPR001610 -
Lal18g0844 388 Pfam PAS domain 247 346 IPR000014 -
Lal18g0844 388 Pfam PAS domain 40 130 IPR000014 -
Lal18g0844 388 CDD PAS 257 345 IPR000014 -
Lal18g0844 388 CDD PAS 43 129 IPR000014 -
Lal18g0844 388 PANTHER PROTEIN TWIN LOV 1 9 386 - -
Lal18g0844 388 TIGRFAM sensory_box: PAS domain S-box protein 43 129 IPR000014 -
Lal18g0844 388 TIGRFAM sensory_box: PAS domain S-box protein 260 345 IPR000014 -
Lal18g0844 388 ProSiteProfiles PAS repeat profile. 260 280 IPR000014 -
Lal18g0844 388 SUPERFAMILY PYP-like sensor domain (PAS domain) 32 130 IPR035965 -
Lal18g0844 388 Gene3D PAS domain 30 159 - -
Lal18g0844 388 Gene3D PAS domain 247 384 - -
Lal18g0844 388 SUPERFAMILY PYP-like sensor domain (PAS domain) 249 346 IPR035965 -
Lal18g0844 388 PANTHER PROTEIN TWIN LOV 1 9 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0844 Lal-Chr18 10950715 10955049 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0844 237 348 AGC Kinase Gene Family AT3G45780 49.107 1.04e-32 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0844 - - gmx:100785562 574.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0844 18 10950715 10955049 Lal18g0844 18 10950715 10955049 ECH