Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0813 ATGTCTCACTTCGGAAGGTCTGGTCCCCCAGACATCGCCGACACTTACTCTCTCCTCGTTCTCAACATCACTTTCCGTACCACCGCTGACGACCTATTCCCTCTATTTGATAAGTACGGAAAAGTTGTCGACATCTTCATCCCCAAAGATCGAAGGACTGGTGAATCGAGGGGTTTTGCATTTGTGCGCTACAATTATCGTGATGAAGCTTCAAAGGCTGTGGATAGGCTCGATGGAAGAATGGTTGATGGTCGTGAAATAACTGTTCAATTTGCAAAGTATGGTCCAAATGCTGAGAGGATTCACAAAGGAAGGATTATCGAAACATCCCCAAAACCAAATTCAAGGCACAGGTCAAGGAGCCGCAGTCCCAGGAAAAGGCATCGCGATGACTACCGAGACAGGGACTATAGGAGGAAAAGCCGCAGCAGGAGTTATGATAGATATGAACGTGACAGATACCGTGGGAGAGACAGAGATTATCGTCGCCGAAGCAGGAGCCACAGTGCTAGCCCAGATTACAAGAGTAGTAGAAGGGAACGCTATGATGATGAGCGTCATAGCAGGAGCCCAAGCCGATCTGTGGATAGCCGCTCCCCTGCCCGACACAGTCCTAGTCCTCGAAGGAGTCCTTCCCCAAAGAAGAGTATTTCCCCTCAAAGGATTGCTTCCCCAAGGAAAAGTCCACGGGGTGAAAGTCCTGACAATCATAACCGTGATGGACGACGGTCTGCTTCACCTCGCAGTGTCTCACCACATGGCCGCCCTGAAGCTTCGCGAAGCCCATCCCCTCGAAACTCCAATGGTGATGTAAGTAGTGCTCACCTTGAACTTTGCAGAATGAGCTCTGTTCTTAATGAAAAATTCTGGAGATTCCTTGACTACTACACTTGTAGCTGTTTTGTTGATATTGCATCTTTTGTCCATTGTCAATGGTCCTTATCAGAGTCATTGAAGGATTTTATGATCTATGTGCTATTTGGTAGGGCGCTTGTTGATATGGTTGCTGTCGATGCCGTTTTTATGTCATTGATGATTGGTCGTGATTTTGATGCTGTTTGCAAGAGTATGCTGGTTTTAGAAGTACGATTGTTATACCAGTGTGCTGATTTGACAGATGATCAGTTGATTTGGTTTTCCTGA 1143 0.4681 MSHFGRSGPPDIADTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYNYRDEASKAVDRLDGRMVDGREITVQFAKYGPNAERIHKGRIIETSPKPNSRHRSRSRSPRKRHRDDYRDRDYRRKSRSRSYDRYERDRYRGRDRDYRRRSRSHSASPDYKSSRRERYDDERHSRSPSRSVDSRSPARHSPSPRRSPSPKKSISPQRIASPRKSPRGESPDNHNRDGRRSASPRSVSPHGRPEASRSPSPRNSNGDVSSAHLELCRMSSVLNEKFWRFLDYYTCSCFVDIASFVHCQWSLSESLKDFMIYVLFGRALVDMVAVDAVFMSLMIGRDFDAVCKSMLVLEVRLLYQCADLTDDQLIWFS 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0813 380 MobiDBLite consensus disorder prediction 100 271 - -
Lal18g0813 380 Gene3D - 5 103 IPR012677 -
Lal18g0813 380 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 88 IPR000504 GO:0003723
Lal18g0813 380 SMART rrm1_1 17 90 IPR000504 GO:0003723
Lal18g0813 380 MobiDBLite consensus disorder prediction 194 223 - -
Lal18g0813 380 MobiDBLite consensus disorder prediction 228 246 - -
Lal18g0813 380 MobiDBLite consensus disorder prediction 100 115 - -
Lal18g0813 380 MobiDBLite consensus disorder prediction 127 193 - -
Lal18g0813 380 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 270 - -
Lal18g0813 380 SUPERFAMILY RNA-binding domain, RBD 9 101 IPR035979 GO:0003676
Lal18g0813 380 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Lal18g0813 380 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SC35 1 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0813 Lal-Chr18 10431598 10434987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0813 14 92 Eukaryotic Initiation Factors Gene Family AT3G11400 35.443 6.83e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0813 K12891 - gmx:100778928 323.168