Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0800 ATGAATATGATGAGAAGGTTGAAGAGCATTGCTTCTGGGAGAACCTCCATTTCTTCAGATCCTGGTGGAGATTCTAACACAAAAAGGGCTAAGTTTGATCAAGAAACTGAAGGGAAGGTCAATGTGGAAACAAATACTGTTGAGATAGGCAACAAAGACCCGGTGGAGAATGTAGATACATCTAAAGAAACTACTGTCGACACATCCAATGTGTCATTGGAAGCTAGAAGTGGGAAGTCGGGCTATAATCAGCTTCCGAAAGAATTGCATGAAATGAAAATTAAAGATGATAAAGGCAAAAAGTACAATGAAAAGGATATAGAAGCAACTATAGTGAGTGGTCATGGAACAGAAACAGGTCAAATAATTACAACTGCTATTGGTGGTCGGGATGGACAACCAAAGCAGACAATCTCGTACATGGCTGAACGTGTTGTCGGGACTGGTTCTTTTGGCGTTGTTTTTCAGGCTAAGTGCCTTGAAACTGGTGAAGCGGTAGCCATAAAGAAGGTGCTGCAAGATAAGAGATATAAGAATAGGGAGCTCCAGGTTATACGCATGCTTGAACATCCTAACGTTGTTCAACTAAAGCACTGTTTCTTTTCAACTACCGATAAAGATGAGTTGTACCTTAACCTAGTTTTGGAGTATGTACCTGAAACTGTCTACAAAGTTTCAAAACACTATATCAGGACACACCATCATATGCCTATCGTTTATATTCAACTCTATACATACCAGATATGCCGTGCATTAAATTATTTACATCAAGTGATTGGCGTCTGTCATCGTGACATCAAACCTCAGAACCTATTGGTTAATCCCCAAACTCATCAGTTAAAAATATGTGATTTTGGGAGCGCAAAGATGTTGGTGCCTGGTGAACCCAACATATCATACATATGCTCACGATATTATAGAGCTCCAGAGCTTATATTTGGGGCAACTGAATACACAACTGCTATTGATATGTGGTCTGTTGGTTGTGTTTTGGCCGAGTTCCTTCTAGGACAGCCGTTGTTTCCTGGAGAGAGTGGAGTTGATCAGTTAGTAGAGATCATTAAGATCTTGGGGACACCAACCAGAGAAGAAATAAAGTGCATGAATCCAAACTACAATGAATTTAAGTTTCCTCAGATCAAAGCGCACCCATGGCATAAGATTTTCGACAAGAGAATGCCGCCAGAAGCAGTCGACCTTGTGTCAAGGTTGCTTCAGTATTCACCAAATCTACGTTGCACTGCTTTGGCTGCATGTGCACACCCCTTCTTCGATAGTCTACGGGACCCAAACTTTAGCTTGCCAAATGGACGACCGGTGCCACCTTTGTACAATTTCACAGATCAAGAACTGTCAGACGCACCGGATGAGTTACGTCAACGTCTCATTCCTCCACACGCTAGGGGTTGA 1410 0.4191 MNMMRRLKSIASGRTSISSDPGGDSNTKRAKFDQETEGKVNVETNTVEIGNKDPVENVDTSKETTVDTSNVSLEARSGKSGYNQLPKELHEMKIKDDKGKKYNEKDIEATIVSGHGTETGQIITTAIGGRDGQPKQTISYMAERVVGTGSFGVVFQAKCLETGEAVAIKKVLQDKRYKNRELQVIRMLEHPNVVQLKHCFFSTTDKDELYLNLVLEYVPETVYKVSKHYIRTHHHMPIVYIQLYTYQICRALNYLHQVIGVCHRDIKPQNLLVNPQTHQLKICDFGSAKMLVPGEPNISYICSRYYRAPELIFGATEYTTAIDMWSVGCVLAEFLLGQPLFPGESGVDQLVEIIKILGTPTREEIKCMNPNYNEFKFPQIKAHPWHKIFDKRMPPEAVDLVSRLLQYSPNLRCTALAACAHPFFDSLRDPNFSLPNGRPVPPLYNFTDQELSDAPDELRQRLIPPHARG 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0800 469 SMART serkin_6 140 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal18g0800 469 Gene3D Phosphorylase Kinase; domain 1 125 219 - -
Lal18g0800 469 CDD STKc_GSK3 135 427 IPR039192 -
Lal18g0800 469 ProSiteProfiles Protein kinase domain profile. 140 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal18g0800 469 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 6 468 - -
Lal18g0800 469 Gene3D Transferase(Phosphotransferase) domain 1 220 468 - -
Lal18g0800 469 PANTHER SHAGGY-LIKE KINASE 6 468 - -
Lal18g0800 469 ProSitePatterns Serine/Threonine protein kinases active-site signature. 261 273 IPR008271 GO:0004672|GO:0006468
Lal18g0800 469 MobiDBLite consensus disorder prediction 9 25 - -
Lal18g0800 469 MobiDBLite consensus disorder prediction 1 61 - -
Lal18g0800 469 Pfam Protein kinase domain 140 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal18g0800 469 ProSitePatterns Protein kinases ATP-binding region signature. 146 170 IPR017441 GO:0005524
Lal18g0800 469 SUPERFAMILY Protein kinase-like (PK-like) 139 455 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0800 Lal-Chr18 10174990 10179815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0800 146 427 Core Cell Cycle Gene Families AT1G76540 36.552 1.01e-56 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Lal18g0800 Pkinase 4.9e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0800 K00924 - gmx:100811346 830.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0800 18 10174990 10179815 Lal18g0800 18 10174990 10179815 ECH