Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0778 ATGTCTTTCACAGGAACTTTGGACAAATGCACAGCATGTGAAAAGACTGTTTATGTGGTTGACTTGTTAACTCTTGAAGGAATTCCTTACCATAAAAACTGCTTCAAATGCATCCATTGCAATGGAGTACTTACAATGAACACATACTCCTCAATGGATGGAGTCCTATACTGCAGGACACATTTTGAACAACTTTTCAAGGAATCTGGCAATTTTGTCAAGAACTTTCAAGCATCAAAGTCTTCTGAGAAGTACGACATGAACAAGACCCCTAGTAAACTCTCTTCCATGTTCAGTGGAACCTTAGACAAATGCTCGGTTTGCACAAAAACAGTCTATCCACTAGAAAAGGTGACATTGGAAGGGGAATGCTTTCACAAGAATTGTTTTAGGTGTGCTCATGGAGGGTGTCACCTAACACATTCCTCTTATGCTGCCCTAGATGGTGTCCTATATTGTAGGGTCCATTTTGCACAACTTTTCATGGAGAAAGGGAACTACAGCCATGTACTCCAAGCTGCTGCACACAAGAGAACTGGTTCTTCTACACCTCCTGAACAAATTGAGTTGCCACCACAAGAACCAACACCTGAGGACAAAAAAGAAGAAGAAAAAGAAGAAGAAAAGGAAGAAGAAAAAGAAGAAGAAGAAACCTCTTGA 660 0.4045 MSFTGTLDKCTACEKTVYVVDLLTLEGIPYHKNCFKCIHCNGVLTMNTYSSMDGVLYCRTHFEQLFKESGNFVKNFQASKSSEKYDMNKTPSKLSSMFSGTLDKCSVCTKTVYPLEKVTLEGECFHKNCFRCAHGGCHLTHSSYAALDGVLYCRVHFAQLFMEKGNYSHVLQAAAHKRTGSSTPPEQIELPPQEPTPEDKKEEEKEEEKEEEKEEEETS 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0778 219 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 131 170 - -
Lal18g0778 219 SMART lim_4 104 156 IPR001781 -
Lal18g0778 219 SMART lim_4 9 61 IPR001781 -
Lal18g0778 219 Gene3D Cysteine Rich Protein 5 102 - -
Lal18g0778 219 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Lal18g0778 219 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 207 - -
Lal18g0778 219 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Lal18g0778 219 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 97 130 - -
Lal18g0778 219 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Lal18g0778 219 PANTHER OS06G0237300 PROTEIN 1 207 IPR045268 GO:0051015
Lal18g0778 219 MobiDBLite consensus disorder prediction 175 219 - -
Lal18g0778 219 Pfam LIM domain 10 65 IPR001781 -
Lal18g0778 219 Pfam LIM domain 105 160 IPR001781 -
Lal18g0778 219 Coils Coil 198 219 - -
Lal18g0778 219 MobiDBLite consensus disorder prediction 193 207 - -
Lal18g0778 219 ProSiteProfiles LIM domain profile. 103 163 IPR001781 -
Lal18g0778 219 Gene3D Cysteine Rich Protein 103 169 - -
Lal18g0778 219 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0778 Lal-Chr18 9625455 9626859 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Lal18g0778 LIM 3.5e-09 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0778 - K09377 gmx:100800234 349.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0778 18 9625455 9626859 Lal18g0778 18 9625455 9626859 ECH
Lal6g0940 6 6552340 6553878 Lal18g0778 18 9625455 9626859 LSH
Lal22g0820 22 6128485 6130193 Lal18g0778 18 9625455 9626859 LSH
Lal9g1405 9 15814978 15817874 Lal18g0778 18 9625455 9626859 PCT
Lal1g2023 1 22367185 22369792 Lal18g0778 18 9625455 9626859 PCT
Lal18g0778 18 9625455 9626859 Lal9g1405 9 15814978 15817874 PCT
Lal18g0778 18 9625455 9626859 Lal1g2023 1 22367185 22369792 PCT