Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0758 ATGACAAATTCGGAACTTCAATGGTGTGTTGAGCACACCGCTTTTCACTCGAGACCTTCTGTCTGGCTTCCTCCACATTGGGCGCTGCTTCCACGCTCAGCATCTCCTGCATTGAGCACAATTGAGCTGATTTCGTGGCTTTTGCATGCTTGTGCTATTTTGGCCCATTCCTTGGCCCGTTTAGCCATTTTTCAGCCTGTGATGAAAACTTGGAAAAATTTTGGAGAAACAATGGGAAGGGCACCATGTTGTGATAAGATTGGGTTGAAAAAAGGACCTTGGACACCTGAAGAGGATGAGATTCTTGTTAATTATATCAACAACAATAGTGGTCATGGAAGTTGGCGTTCTCTTCCTAAGTTGGCAGGTCTTCTTCGGTGTGGCAAGAGTTGCCGGCTTAGGTGGACAAACTATCTTAGACCTGATATCAAACGTGGCCCTTTTACACTTCATGAAGAAAAACTAGTCATTCAGCTTCATGGCATCCTTGGAAATAGGTGGGCTGCAATATCCTCTCAACTAAGCGGAAGAACAGACAACGAGATCAAGAATTTATGGAACACACATTTGAAGAAACGTCTCATAAGAATGGGATTTGACCCTCAAACTCATTTGCCAATGGTCTATTCATGTTACCAAGTTGGCAAGTCACATGCATCATCTGTTTCCACCCACCACATGGCACAGTGGGAAAGTGCAAGACTTGAAGCTGAAGCTAGACAATCAAAGGACTCATCTTTCTTCAATAATGATCCTAATGTTTCTGACTATTTTCTCCGGATATGGAACTCACAAGTCGGCGAATCATTTCGATGTGTTCGCAAACCAGATGACATAACTAGTCCTATTTCCCATGGATCATCTTCAAATATATCTGATTCAATGTCTGCTACTACAATAGAGTTAGCAAACAATGTGAAAGAGGACCTGAAGTGGAGCAATTCTGATTCAGAAAGTGCCAATGACTTAGAAAACTCATCTGATACTGCATTGCAGTTCTTGTTAGATTTTCCCATAAACAATGACATGAGCTTCTTACAAGAAAGCTCTTTCACTTGCCCCCCTTAG 1068 0.4232 MTNSELQWCVEHTAFHSRPSVWLPPHWALLPRSASPALSTIELISWLLHACAILAHSLARLAIFQPVMKTWKNFGETMGRAPCCDKIGLKKGPWTPEEDEILVNYINNNSGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPDIKRGPFTLHEEKLVIQLHGILGNRWAAISSQLSGRTDNEIKNLWNTHLKKRLIRMGFDPQTHLPMVYSCYQVGKSHASSVSTHHMAQWESARLEAEARQSKDSSFFNNDPNVSDYFLRIWNSQVGESFRCVRKPDDITSPISHGSSSNISDSMSATTIELANNVKEDLKWSNSDSESANDLENSSDTALQFLLDFPINNDMSFLQESSFTCPP 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0758 355 Gene3D - 88 145 - -
Lal18g0758 355 CDD SANT 93 139 IPR001005 -
Lal18g0758 355 PANTHER TRANSCRIPTION FACTOR MYB104-RELATED 78 347 - -
Lal18g0758 355 ProSiteProfiles Myb-like domain profile. 86 139 IPR001005 -
Lal18g0758 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 139 IPR017930 -
Lal18g0758 355 CDD SANT 147 190 IPR001005 -
Lal18g0758 355 SUPERFAMILY Homeodomain-like 88 186 IPR009057 -
Lal18g0758 355 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 78 347 - -
Lal18g0758 355 Pfam Myb-like DNA-binding domain 145 190 IPR001005 -
Lal18g0758 355 Pfam Myb-like DNA-binding domain 91 139 IPR001005 -
Lal18g0758 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 140 194 IPR017930 -
Lal18g0758 355 ProSiteProfiles Myb-like domain profile. 140 190 IPR001005 -
Lal18g0758 355 Gene3D - 147 194 - -
Lal18g0758 355 SMART sant 144 192 IPR001005 -
Lal18g0758 355 SMART sant 90 141 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0758 Lal-Chr18 9236996 9242648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0758 78 348 MYB Transcription Factor Family AT3G61250 62.191 5.14e-114 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal18g0758 Myb_DNA-binding 4.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0758 K09422 - gmx:100800408 374.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0943 6 6568734 6571436 Lal18g0758 18 9236996 9242648 LSH
Lal6g0943 6 6568734 6571436 Lal18g0758 18 9236996 9242648 PCT
Lal18g0758 18 9236996 9242648 Lal6g0943 6 6568734 6571436 PCT