Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0757 ATGAACAACAGTAACAACAACAATAACAGACCGAGATACCCACCCGGTATCGGTTATGGACGCGGTGGTGGAGGGTTCACTCAGAACCCTAACCAAAACGAACCGTTTCAACCAAGGTCCTCTTATCAGCACCAGCAACAACACTACGTGCAGAGGAATTTTGTTCCGCAGCAACAGCAACAGCAGCAGCAGCAACAGCAGCAGCAACAATGGCTGAGAAGGGTGCAGTTAGGTGGTGGCGAATCGAACCACAATGACGAGGTTGAAAAGAATGTGCAGACGGAAGCCGATGACTCAAGTTCACAAGATTGGAAGGCAAGACTAAAGGCTCCACCAGCTGATACACGCTATAAGACAGAGGATGTGACAGCAACTAAAGGAAATGAATTTGAAGATTACTTTTTGAAGCGTGAGCTGCTCATGGGAATATATGAGAAGGGTTTTGAAAGGCCTTCTCCTATCCAAGAAGAAAGCATTCCAATTGCCCTTACTGGTAGTGACATTCTTGCTAGGGCAAAAAATGGAACAGGCAAAACAGCTGCATTTTGCATTCCTGCATTGGAAAAAATTGATCAAGATACTAATGTTATTCAAGCTGTTATACTGGTCCCCACTCGAGAATTAGCTTTGCAAACATCTCAAGTGTGTAAAGAGCTTGGAAAGCATTTGAAAATTGAAGTTATGGTCACAACAGGTGGTACCAGCTTGAAAGATGATATAATGCGCTTATACCAACCAGTTCATTTGCTAGTTGGAACTCCAGGAAGAATATTAGATCTTGCTAAGAAGGGTGTTTGTATTCTTAAAGATTGCTCTATGCTTGTTATGGATGAGGCTGATAAGCTTTTGTCCCCGGAGTTCCAGCCTTCCATACAGCAACTGATTCAATTTCTTCCTTCAAACCGTCAAATTCTAATGTTTTCAGCAACATTTCCTGTTACTGTAAAGGACTTCAAAGATAGATATCTTCAAAAACCTTATGTTATTAACCTTATGGATGAGCTAACTCTGAAGGGTATCACACAATACTATGCATTTGTGGAAGAGAGGCAGAAAGTCCACTGCCTCAATACTCTATTTTCTAAGCTGCAAATAAACCAGTCGATCATCTTCTGCAATTCAGTGAATAGGGTTGAACTTCTTGCCAAGAAAATCACAGAACTTGGTTATTCGTGTTTCTATATTCATGCAAAGATGTTGCAAGATCATCGTAATAGAGTATTTCACGACTTCCGGAATGGTGCATGCCGAAATCTTGTTTGTACTGATCTTTTTACTAGGGGAATAGACATCCAGGCCGTCAATGTTGTTATTAATTTTGATTTTCCCAAGAACTCAGAAACTTACTTGCACAGGGTTGGTCGTTCAGGGAGGTTTGGGCACCTTGGTTTAGCAGTGAACTTGATCACTTATGAGGATCGCTTTAACTTATATAGGATTGAACAAGAACTTGGCACTGAAATAAAGCAAATTCCACCATTCATTGACCAGGCAGTTTATTGCCGATGA 1509 0.4129 MNNSNNNNNRPRYPPGIGYGRGGGGFTQNPNQNEPFQPRSSYQHQQQHYVQRNFVPQQQQQQQQQQQQQQWLRRVQLGGGESNHNDEVEKNVQTEADDSSSQDWKARLKAPPADTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDTNVIQAVILVPTRELALQTSQVCKELGKHLKIEVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCSMLVMDEADKLLSPEFQPSIQQLIQFLPSNRQILMFSATFPVTVKDFKDRYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPFIDQAVYCR 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0757 502 CDD DEADc_DDX6 130 330 - -
Lal18g0757 502 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 6 37 502 - -
Lal18g0757 502 SMART helicmild6 379 460 IPR001650 -
Lal18g0757 502 MobiDBLite consensus disorder prediction 83 118 - -
Lal18g0757 502 SMART ultradead3 147 343 IPR014001 -
Lal18g0757 502 MobiDBLite consensus disorder prediction 1 48 - -
Lal18g0757 502 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 339 499 IPR001650 -
Lal18g0757 502 Pfam DEAD/DEAH box helicase 153 317 IPR011545 GO:0003676|GO:0005524
Lal18g0757 502 Gene3D - 333 501 IPR027417 -
Lal18g0757 502 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 159 329 IPR014001 -
Lal18g0757 502 CDD SF2_C_DEAD 340 469 - -
Lal18g0757 502 MobiDBLite consensus disorder prediction 25 48 - -
Lal18g0757 502 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 128 156 IPR014014 GO:0003724
Lal18g0757 502 MobiDBLite consensus disorder prediction 79 118 - -
Lal18g0757 502 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 275 283 IPR000629 -
Lal18g0757 502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 198 482 IPR027417 -
Lal18g0757 502 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 37 502 - -
Lal18g0757 502 Gene3D - 83 332 IPR027417 -
Lal18g0757 502 Pfam Helicase conserved C-terminal domain 354 460 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0757 Lal-Chr18 9177987 9184507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0757 128 492 Eukaryotic Initiation Factors Gene Family AT3G19760 38.420 4.74e-94 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0757 K12614 - fve:101307921 841.262