Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0678 ATGGAGAAGAAGATGAATTTTGTTAAGAATGGAGAAGTGAAATTGCCACCTGGCTTCCGTTTTCACCCAACTGATGAGGAATTGGTTTTACAATATTTAAGGCGTAAAGTATTCTCTTTTCCTTTACCTTCTTCCATCATTCCTGAGGTTGATGTTTGCAAATCTGACCCTTGGGATTTGCCTGGTGATTTGGAGCAAGAGAGGTACTTCTTCAGCACAAAGGAAGCAAAATATCCAAATGGAAACAGATCCAACAGAGCTACTAATTCAGGTTATTGGAAAGCAACTGGGTTGGACAAACAAATTTTGACTTCAAAAGGGAACAACAACAATAATAACAACAAAGGTGTGGGGATGAAGAAGACTCTTGTTTTCTATAGAGGAAAACCACCTCATGGTTCCAGAACTGATTGGATCATGCATGAATATCGCCTCCTTAACACCACCACTCACTCTCAGACTGGTTTGGTTCCTATGGAAAATTGGGTTTTGTGTCGGATATTTTTGAAGAAGAGAGGTGGTAAAAATGTGAAGGATACAAATATAGCCATAATAGACAAGTTTAGACACAATAACAAAAAGAACAAGGTGAAGAACAACACTTCAAAGGTGGTTTTCTATGACTTCTTGGCTAAGAATAACAACAACAACAACAACAACACAAGTTCCTCATCCTCGGATAGAAGTGGAATCACAGAGGTTTCAAGTTCAATCAATGAATTAGATAAACAACATGAAGAGAGTAGTAGCTGCAACAGTTTTCCTTATTCAAGGAGAAAACCTTAA 786 0.3791 MEKKMNFVKNGEVKLPPGFRFHPTDEELVLQYLRRKVFSFPLPSSIIPEVDVCKSDPWDLPGDLEQERYFFSTKEAKYPNGNRSNRATNSGYWKATGLDKQILTSKGNNNNNNNKGVGMKKTLVFYRGKPPHGSRTDWIMHEYRLLNTTTHSQTGLVPMENWVLCRIFLKKRGGKNVKDTNIAIIDKFRHNNKKNKVKNNTSKVVFYDFLAKNNNNNNNNTSSSSSDRSGITEVSSSINELDKQHEESSSCNSFPYSRRKP 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0678 261 ProSiteProfiles NAC domain profile. 15 170 IPR003441 GO:0003677|GO:0006355
Lal18g0678 261 Pfam No apical meristem (NAM) protein 16 145 IPR003441 GO:0003677|GO:0006355
Lal18g0678 261 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 6 260 - -
Lal18g0678 261 PANTHER NAC DOMAIN-CONTAINING PROTEIN 83-LIKE 6 260 - -
Lal18g0678 261 SUPERFAMILY NAC domain 10 170 IPR036093 GO:0003677|GO:0006355
Lal18g0678 261 MobiDBLite consensus disorder prediction 212 238 - -
Lal18g0678 261 Gene3D NAC domain 24 176 IPR036093 GO:0003677|GO:0006355
Lal18g0678 261 MobiDBLite consensus disorder prediction 212 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0678 Lal-Chr18 5886331 5887984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0678 5 254 NAC Transcription Factor Family AT5G13180 56.923 1.58e-94 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lal18g0678 NAM 2.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0678 - - pop:7496551 348.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0678 18 5886331 5887984 Lal18g0678 18 5886331 5887984 ECH
Lal18g0678 18 5886331 5887984 Lal22g1412 22 16969104 16970501 LSH