LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal18g0625	ATGAATGATTCTTCAGTGAAGAATTTGGCTATCATAGAGAAGAAGGCACAGAAACCAGGTGGTTGTGTTGGCATTGTCTTTCAGCTCTTTGAATGGAAGAGGAAACTTGCCAAGAAAAAACTCTTCTCCAAGAAACTTCTACTTCCTGCTCCTGCAAAAAAGTTCAATGGAGATGAAAAAATGCCCAATTCTAAGCTCCACTTGATTGCTAATGAGAACAATGGAGGTTTCCCAAGTCCTAAAAAGGGCACGAGTCGTTCAGATGTAGACCAAAGGACTGAAATGCAAGTCCCGAGTCTTGTAGCTAGGTTGATGGGTCTAGAAGCTATTCCGGGTGCTCAGCGAGATAAGTCCAAGAAAGCTTTGATTTCTGATAATTGTGGTGAAGAGGAGAAAGAATCTTTGGGTAATCATTGTGCATTGGATAGACTAGGTGTGGATTTGGAAGTGGGAGTTGTGAAGCATGATTCAAGACCTCAGAAGCTTCAGAAAACCGGGACATCTGATAGAATGGCAGTGACAAGGTTTGGAGCAGAAGCCTTGCAAATTAAGAGTGTTTTGTCTCATGCAAGGAGGAATAATCAGCAAAACCATCATCACCCGAAGCTTGCTTCTCCACTGAAGAGTCCAAGAATTACTTCAGGAAAGAGTGCCTCTCGAAGCTCCCGGTTAATTGGAGCAGCTACTAAAATCTTGGAACCTGGACTTCAGAATAAGAGCAGATTTAAAGGTTCTCTAACATATTCTTCGTCCGTGTATCCTCCTAAGACTGGCACTGTGACCAATTTTATAGGACCAAGCTCTGCAGTAATGCAAAATCAATCATGTTATTATGCTGCCTCAGCCAAACCTTCGATTGGCCATACTTCCTGCCAAAATTGTGGTACTTTTGTTGATGTTGTTGAGTGCACACCAGAGGTTCAGAAACCGCCAGCTATTGTCCCGGACGTCATCGCCCCTGCCTCTATGGTATCAGCATGGAAGAATGGAAGGACATTCACTCCCTCTCATGAACATGAAAGAGATATCGTTCTTCTGAGAAGTAAGGAGAAGATTATATCTGTTTTTACTGAAGAGGGAAAAAACAATGCAAATCTGCAACAATCTTGTAATGGACCCGCTACCAGAAGAATGCCAATGCCTCGAGAAAATCCAGCCACATGGAATTCATCACACCAGCCATTTAGGACCTTAGAGGATGATGCATCTTCTTTTGCCTTGAAACAGAAAACTCGAACACAAGAACAGATGTCAAGCAGTGAAAGACTTTCATCTGGACTGACAATGACTAATATGCAAGTAAAAAGATTATCATCGTCAATCAGCACTGTTAGTGGCACTAAAGACTTCGTTGCTTTTAATAGAAACACAAGTGGTCATACAAGGATGAGGGCACATATGAAAGTGGATAGTTCCAAATTTGACACGCAGAAAAAACCTTGTAATAGAAAGCATAATTCTTTGTTTCATGCAAAGACATTAGAGAGAAAAAGAAGGACCCTAAATGTCACACAAGTTGAAGGTACAGCTTCTGTTGATTCAAATGGTATGAGACTGACAAAGCTTCATTCTGATGCATTTGGTGGAAAAAGGAAGGACTTTAACGCTTCCTCCACAACCAGTTCTAATGTCAAAAGTAAACAATGTGATCAGGGAAAAGCAATTAAGATTAATGATAACAAGATCAATGGAGTAGTTTCTTTTACATTTGATTCCCCCTTGAAGCAAGAGCTAGAAATACCTTCTGAGATTCAAGAGTCAAGCAGCAACAATGAGAGGAAAACATGTTTCCAAAGACCTTCAACCTTGAGAGTTGATGCTTTAGGTGCCTTTTTGGTACAAAAACTTAAGGAATTAACCTCTCAAAAAGACGAGAATCTGGCTACAGGTGCTCCACCTAAAAAATCTAGTGCGACAATTATTCAAGAACTGATATCTGCTCTAGGTTCAGAGCAACTGATCTGTCATGATGATCGTCATTTGTTCAACGAAAACAATGGCGTCCATTATGAAGTAAAACGAGATACATTGTCAGGAACCTCTTGCAACGGTAATCATCTTAGCCCTGGATCTGTTCTGGAAGCTTCCTTTTCTTCCAGTAGTCTGGATGAAAGCTCAGGGCATGGTTTTCACCCCGACTCCACGAATTACTCATATGATCAACTGGAACATTTAGAATATGATTGTGATATTTCAGATTCTGCAACAACCTTTAACAAAGGGAGGATATGTTGTGAGAAGCTGACTGGTCGTGTCGATCAAATTCCTAAGGCATTTCAAAGTTTATATTCTTTTGGGACAAGTTTGACAACAAGCAAGCTCACTCATATGAAAGATGTTATCTTGAATGCGGAATTGGTGCTTGGATTATCCAGCAACCATAGTGAGGACAATGTAGTGCCACAACTTGTAATTTCTCGGTTTCTCCTCAATGAACTAGACAATATGGCGGATGATGCTATGTGCACAAATTTTAATGTCTTTGTTTGTTGTGAGGATTCTAAACAGAGAAAAGAACTAAAGGGGTTTCTCTTTGATTGTGTTATAGAATATCTAGAATCAAACTGCTGCAGATATTTTAAATGTGGATTTGAGGCATGGACGAAACTACCGTTGTGCATGAAATCCGATATATTAGCTCAAGAGGTCATGAAGGAGATGAAGAAGTGGGCATGTATGGTTGGAATGGTAGCCGACGAAATAATAGAATGGGAGATGAGCCATTCTCTGGGGAAATGGACTGACTTTGATATGGAAGCATTTGAGGCTGGTGTTGATATGGGTGGGGACATAATTGAAATTTTGGTTGACGAAATTGTTGAAGATCTTCTAGGTTGCAATCTGAGCTCCATTTGCTTCTAA	2862	0.4046	MNDSSVKNLAIIEKKAQKPGGCVGIVFQLFEWKRKLAKKKLFSKKLLLPAPAKKFNGDEKMPNSKLHLIANENNGGFPSPKKGTSRSDVDQRTEMQVPSLVARLMGLEAIPGAQRDKSKKALISDNCGEEEKESLGNHCALDRLGVDLEVGVVKHDSRPQKLQKTGTSDRMAVTRFGAEALQIKSVLSHARRNNQQNHHHPKLASPLKSPRITSGKSASRSSRLIGAATKILEPGLQNKSRFKGSLTYSSSVYPPKTGTVTNFIGPSSAVMQNQSCYYAASAKPSIGHTSCQNCGTFVDVVECTPEVQKPPAIVPDVIAPASMVSAWKNGRTFTPSHEHERDIVLLRSKEKIISVFTEEGKNNANLQQSCNGPATRRMPMPRENPATWNSSHQPFRTLEDDASSFALKQKTRTQEQMSSSERLSSGLTMTNMQVKRLSSSISTVSGTKDFVAFNRNTSGHTRMRAHMKVDSSKFDTQKKPCNRKHNSLFHAKTLERKRRTLNVTQVEGTASVDSNGMRLTKLHSDAFGGKRKDFNASSTTSSNVKSKQCDQGKAIKINDNKINGVVSFTFDSPLKQELEIPSEIQESSSNNERKTCFQRPSTLRVDALGAFLVQKLKELTSQKDENLATGAPPKKSSATIIQELISALGSEQLICHDDRHLFNENNGVHYEVKRDTLSGTSCNGNHLSPGSVLEASFSSSSLDESSGHGFHPDSTNYSYDQLEHLEYDCDISDSATTFNKGRICCEKLTGRVDQIPKAFQSLYSFGTSLTTSKLTHMKDVILNAELVLGLSSNHSEDNVVPQLVISRFLLNELDNMADDAMCTNFNVFVCCEDSKQRKELKGFLFDCVIEYLESNCCRYFKCGFEAWTKLPLCMKSDILAQEVMKEMKKWACMVGMVADEIIEWEMSHSLGKWTDFDMEAFEAGVDMGGDIIEILVDEIVEDLLGCNLSSICF	953

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal18g0625	953	MobiDBLite	consensus disorder prediction	70	91	-	-
	Lal18g0625	953	MobiDBLite	consensus disorder prediction	192	221	-	-
	Lal18g0625	953	MobiDBLite	consensus disorder prediction	533	547	-	-
	Lal18g0625	953	Pfam	DUF761-associated sequence motif	90	115	IPR032795	-
	Lal18g0625	953	Pfam	Domain of unknown function (DUF4378)	775	938	IPR025486	-
	Lal18g0625	953	PANTHER	DNAA INITIATOR-ASSOCIATING PROTEIN	9	945	-	-
	Lal18g0625	953	MobiDBLite	consensus disorder prediction	528	547	-	-
	Lal18g0625	953	MobiDBLite	consensus disorder prediction	364	394	-	-
	Lal18g0625	953	PANTHER	PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED	9	945	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal18g0625	Lal-Chr18	5435116	5440939	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal18g0625	10	943	TRM (TON1 Recruiting Motif) Superfamily	AT1G67040	30.864	2.78e-77	268

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal18g0625	-		-	lang:109357106	1275.38

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal18g0625	18	5435116	5440939	Lal18g0625	18	5435116	5440939	ECH
	Lal18g0625	18	5435116	5440939	Lal22g1377	22	16676466	16681281	LSH

Showing 1 to 2 of 2 entries