Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0605 ATGGCATTGCAGAACATTGGTGCTGGGAATAGTGACGATGCCTTCTACAGGTATAAGATGCCTAGAATGATTACCAAAATTGAGGGTAGAGGTAATGGTATAAAAACAAATGTTGTCAATATGGTTGATATTGCGAAGGCATTGGCAAGGCCAGCATCTTACACAACCAAGTATTTTGGCTGTGAACTTGGAGCCCAGTCAAAATTTGATGCGAAAACTGGGACTTCCCATGTTAATGGAGCACATGAAACTGCAAAACTTGCCGGCCTTCTTGAGAACTTCATCAAGAAATACGTTCAATGTTATGGCTGTGGGAATCCTGAAACTGAGATCTTAATTACGAAGACTCAAATGCTCCAGTTGAAATGTGCTGCTTGTGGTTTCGTGTCCGATGTGGATATGAGAGACAAGCTGACTACCTTTATCATCAAGAACCCTCCTGAAGTTAAGAAAGGATCCAAAGACAAGAAGGCCATGAGGAGGGCTGAGAAGGAGAGACAGAAGGAAGGTGAAGCAGCTGATGAGGAACTGAAAAAGGTGAAGAAAGAGGCTAAAAAGAAAGTTCCTTCTTCAAAGACTGGAACTATAAAGTCTACCTCTTCAAAGAAGAAAGGAAGTGGATCTGATGAAGAACGTTCATCACCTCCTCACAGTCAAATTGAAGAGAAAGAGGTTTCTAATGATGACGATGAAGATGATGATGATGATGTCCAATGGCTAACTGATACATCACTTAACGCTGCTCGCCAACGTATCCAAGAACAGTTAAGTGCTGTGACAGTGGATATGGTCATGCTCTCTACCGAAGAGCCTGAGAAGAAGAAAAAACCAGCTAGTAAAGCAAGTGAAGGTTCTGAGAATGGTGGTGATGTGAAGGATAAACTGGCCCGGGAAGTGAAAGCAAGTTTGAAGAAAGGAGTTGGTGCGGAAGAGTTGCATTCCCACCTTGCAGCCCTTCCTGGATCTACTCAGGAAAAGATGAGTGTTTTGTTTGACTCCCTTTTCGAGGGAGTTGAGAAAGGTTTTGCAAAAGAAGCAATTAAGAAGAGGAGCTATCTTGCTGTTGCAGTTTCTGGGGAAGAGGGATTGCAGCTGTTATTGCTCCATGCTATTGAGGAATTTTCTTGCAAGCCTAATTCCAATGCATTGAAGGAGGTTGCTCTGCTTTTGAAAACTCTTTATGATGCTGATGTGTTGGAGGAAGAGCCCATAGTGCAGTGGTATTCAAAAGGACTGAAGGGTGATAAAAAGGGTTCTCAGCTTTGGAAGAATGTTAAACCTTTCATTGATTGGCTTCAGAGTGCTGAATCAGAATCAGAATCAGAGGAAGAGATTCCTGCAGGTTCTGCGGCTGAAGATCCCAAGGTGAAGGCTATTATCCATTTTGGAGCAATTGAGTTGCTTGGAGAGTATTTTTCGTCGTCTAGAAAAAAGAACAGGCCATTGCCAACTATACTTAGCTGCATGCATCGTGCGCCATACCAGGAACATACTGAGCTTTGTAGTTACTTTTGGCTGCGTACTATAATTGCAGAAAGAGATGTTTTAGTCATCATGGCTTTGCAGAACATTGGTGCTAGTAATAGTGATGATGCCTTCTATAGGTATAAGATGCCTAGAATGATAACAAAAATTGAGGGTAGAGGTAATGGCATTAAAACAAATATTGTCAATATGGTTGACATTTCAAAAGCCTTGGCCAGGCCAGCCGCTTACACAACCAAGTATTTCGGTTGTGAACTTGGAGCCCAATCAAAATTTGATGAGAAAACTGGGACATCGCATGTTAATGGGTCACATGAAACTGCAAAACTTGCAGGCCTTCTGGAGAACTTCATCAAGAAATATGTTCAGTGTTATGGCTGTGGGAATCCTGAAACTGAGATCCTCATTACCAAGAGTCAAATGATCCAGCTGAAATGCGCCGCTTGTGGCTTTGTGTCTGATGTGGATATGAGAGACAAGCTGACTACCTTTATCATCAAGAATCCTCCTGAAGCAAAGAAAGGATCCAAGGACAAGAAGTCCATGAGGAGAGCTGAGAAAGAGAGATTGAAGGAAGGGGAAGCAGCTGACGAGGAAGTGAAAAAGCTGAAGAAAGAAGTGAAGAAGAAAGTCTCTTCATCTTCAAAGAATGGAACTGTGAAATCTACCTCTTCAAAGAAGAAAGGAAGTGGCTCTGATGAAGACCGTGTGTCACCTACTCACAATCCAATTGATGAGAAAGAGGCAGCTAGTGATGAAGATGAAGATGACGATGATGATGTACAATGGCAAACAGATACATCGATAGATGCTGCTCGTCAACGTATCCAAGAACAGCTAAGTGCTGCGACAGCTGATATGGTCATGCTCTCCACAACTGAACCCGAGAAGAAGAAGAAATCAGCTAGTAAGGCAAGCGGTGGTTCTAATGGTAACTCAATGGACCACGGTAAACTGGTTGGGGAAGTGAAAGCATGTTTGAAGAAAGGCATTGGTGCAAAAGAATTGCAGTCCCATCTGGCATCACTTCCTGGATCTGCTCAAGAAAAGATGAGTGCTCTTTATGAAGCCATATTCAATGGCATGGAGAAAGGGTTTGCTAAAGAAGCAACCAAGAAGAGGAGCTACCTCGCCTCTGCAGTTGCAGAGAAGGGTTCACAGTCGTTGTTGCTGCATGCAATCGAGGAATTTTCTGTGAAGTCCAGTTTCAATGCATTGAAGGAGGTTGCACTGGTTTTGAAGGCACTCTATGATGGTGATGTGTTGGAGGAGGAGCACATAGTGCAATGGTATCAAGGAGGGCTGAAAGGTGATAACAAGGACTCTCAGATTTGGAAGAATGTTAAACCCTTCATTGATTGGCTTCAGACTGCGGAATCAGAATCAGAGGAAGAATGA 2883 0.4301 MALQNIGAGNSDDAFYRYKMPRMITKIEGRGNGIKTNVVNMVDIAKALARPASYTTKYFGCELGAQSKFDAKTGTSHVNGAHETAKLAGLLENFIKKYVQCYGCGNPETEILITKTQMLQLKCAACGFVSDVDMRDKLTTFIIKNPPEVKKGSKDKKAMRRAEKERQKEGEAADEELKKVKKEAKKKVPSSKTGTIKSTSSKKKGSGSDEERSSPPHSQIEEKEVSNDDDEDDDDDVQWLTDTSLNAARQRIQEQLSAVTVDMVMLSTEEPEKKKKPASKASEGSENGGDVKDKLAREVKASLKKGVGAEELHSHLAALPGSTQEKMSVLFDSLFEGVEKGFAKEAIKKRSYLAVAVSGEEGLQLLLLHAIEEFSCKPNSNALKEVALLLKTLYDADVLEEEPIVQWYSKGLKGDKKGSQLWKNVKPFIDWLQSAESESESEEEIPAGSAAEDPKVKAIIHFGAIELLGEYFSSSRKKNRPLPTILSCMHRAPYQEHTELCSYFWLRTIIAERDVLVIMALQNIGASNSDDAFYRYKMPRMITKIEGRGNGIKTNIVNMVDISKALARPAAYTTKYFGCELGAQSKFDEKTGTSHVNGSHETAKLAGLLENFIKKYVQCYGCGNPETEILITKSQMIQLKCAACGFVSDVDMRDKLTTFIIKNPPEAKKGSKDKKSMRRAEKERLKEGEAADEEVKKLKKEVKKKVSSSSKNGTVKSTSSKKKGSGSDEDRVSPTHNPIDEKEAASDEDEDDDDDVQWQTDTSIDAARQRIQEQLSAATADMVMLSTTEPEKKKKSASKASGGSNGNSMDHGKLVGEVKACLKKGIGAKELQSHLASLPGSAQEKMSALYEAIFNGMEKGFAKEATKKRSYLASAVAEKGSQSLLLHAIEEFSVKSSFNALKEVALVLKALYDGDVLEEEHIVQWYQGGLKGDNKDSQIWKNVKPFIDWLQTAESESEEE 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0605 960 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 5-1-RELATED 1 442 - -
Lal18g0605 960 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 5-1-RELATED 519 960 - -
Lal18g0605 960 MobiDBLite consensus disorder prediction 787 812 - -
Lal18g0605 960 CDD W2_eIF5 810 958 - -
Lal18g0605 960 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743|GO:0006413
Lal18g0605 960 SMART eIF2Bneu4 533 647 IPR002735 GO:0003743|GO:0006413
Lal18g0605 960 MobiDBLite consensus disorder prediction 267 294 - -
Lal18g0605 960 Coils Coil 159 179 - -
Lal18g0605 960 CDD W2_eIF5 285 435 - -
Lal18g0605 960 MobiDBLite consensus disorder prediction 666 707 - -
Lal18g0605 960 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743|GO:0006413
Lal18g0605 960 Pfam Domain found in IF2B/IF5 529 645 IPR002735 GO:0003743|GO:0006413
Lal18g0605 960 SMART 542_3 350 438 IPR003307 GO:0005515
Lal18g0605 960 SMART 542_3 869 956 IPR003307 GO:0005515
Lal18g0605 960 ProSiteProfiles W2 domain profile. 804 960 IPR003307 GO:0005515
Lal18g0605 960 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743|GO:0006413
Lal18g0605 960 MobiDBLite consensus disorder prediction 722 743 - -
Lal18g0605 960 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 528 619 IPR016189 GO:0003743|GO:0006413
Lal18g0605 960 Gene3D - 3 104 - -
Lal18g0605 960 Gene3D - 519 622 - -
Lal18g0605 960 Gene3D - 290 449 - -
Lal18g0605 960 Gene3D - 814 960 - -
Lal18g0605 960 MobiDBLite consensus disorder prediction 664 756 - -
Lal18g0605 960 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 10 101 IPR016189 GO:0003743|GO:0006413
Lal18g0605 960 Gene3D - 105 145 - -
Lal18g0605 960 Gene3D - 623 663 - -
Lal18g0605 960 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1 442 IPR045196 GO:0003743|GO:0006413
Lal18g0605 960 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 519 960 IPR045196 GO:0003743|GO:0006413
Lal18g0605 960 MobiDBLite consensus disorder prediction 147 237 - -
Lal18g0605 960 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 616 651 IPR016190 GO:0003743|GO:0006413
Lal18g0605 960 MobiDBLite consensus disorder prediction 203 224 - -
Lal18g0605 960 Pfam eIF4-gamma/eIF5/eIF2-epsilon 882 960 IPR003307 GO:0005515
Lal18g0605 960 Pfam eIF4-gamma/eIF5/eIF2-epsilon 364 442 IPR003307 GO:0005515
Lal18g0605 960 ProSiteProfiles W2 domain profile. 278 442 IPR003307 GO:0005515
Lal18g0605 960 MobiDBLite consensus disorder prediction 148 190 - -
Lal18g0605 960 SUPERFAMILY ARM repeat 819 954 IPR016024 -
Lal18g0605 960 SUPERFAMILY ARM repeat 289 436 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0605 Lal-Chr18 5206348 5211705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0605 519 953 Eukaryotic Initiation Factors Gene Family AT1G77840 62.247 5.56e-171 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0605 K03262 - gmx:100777906 652.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0605 18 5206348 5211705 Lal18g0605 18 5206348 5211705 ECH
Lal18g0605 18 5206348 5211705 Lal22g1363 22 16569981 16571783 LSH