Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0596 ATGACCTTCATTCCTTCTCATATTCTCGAAGAAGAAGCAATGACAATAACGACGAGCACCGAGGTCGTTTCAAAGCCTCCTTCATTCCTCGTCTCTCGATTCAACTCTCTTCTCACCACCCGTGTCCTTCACGCGCCGCCTTCTCATCATGAAGAAGAAATCATCTCTCAGATTTACGATTCCTTATTATCTCAACTCACTTCCAATCTGAAACACGTTATCAACGATCTCACTGTAATCGCCCAACAACATAACCGTCACGCTAAGATCATTGCTACTACTATTTGCTCTCGTATTCTTAAGGTGCCTGCAGATCAAAAGCTTCCTACACTTTATCTTTTGGACAGTATTGTAAAAAAAATTGGCCACCAATATGTCGGATACTTCTCTTTACGTCTATCTGAAGTTTTCTGTGAGGTGTACAGGCAGGTTCAGCCTAATATGCATTCTGCTATGCGATATCTCTTCGGTACCTGGTCAAAAGTCTTTCCTCCCTCTGTCCTATGCAAGATTGAATCTCAATTGCAATTTTCTCAAGCAGTTAATAATAGTCAATCGTCAAGTATTAATCCTCTTGGGGCATCTGAATCTCCTCGAGTGACTCATGGGATACATGCCAACCCAAAGTACTTGCGGCATATGGAACTGTCTAGTGCAATTGTGGATAATGTTGGAGGTGAAAGTTTAGAGTCAACAGGAACTGTAGGTAATATAAACAAATCTCATCATGTAGTGGATAAGGGAATAGCAAAAGCATCAGGTAGAGAAGAAGAGCTGAGTGAGTGGCAGCGAAAGCAGTATTCTGTCCATGGTCTGAAAAGACTTCGAACTTCTATGACATACAGTGACAGACTTAATATTGAACAACAACATCCAAGTCCAAAATCTCTAATTGATGCATATGGCACTGACAAAAGCCAAGAAACTTCTGGCAATGAGGCTTTGTCAATTGAATGGCTGCATGGAAATGGTTTAGATAACAAGGTTTTGCCAACCTCATGGCAGAATACCGAAGAGGAGGATTTTAATTGGGAAGAGATGAGTCCAGCATTAGTAGACCGTAGAAGAAATAATGGTTTCTTCAAGGAAAGACCTGTTATTGTTGCAACTAATGCAAATTCTTCCGAGCAAAATACCAAGAAGAGTTTGTCCAGTGGGTCTCAGCATCATGCAGTGGATGATTCCTCTGTTGTAGCAGAACATGCAATTTCCTCTTCAGCTGTACATTTCCTCCTCTTTTCTCTATTATCTTTCAATACTTATGGTCGTGTATCCCATGGTCAGATGTCTGGACTCCAAAATCAAATAAATCAGACTCTGGGCTCCGGTCAACATTTTGATGCTTGGAAGATTGGTAACCATCCATCTAATTCTTCACAACACCCCTTCAATATTAGGGGATCGGAAATGAGTCTTCTGAAGCCTCCCATTGGTAACATTCCCAATACTCATGTAAACCCATACGGGTCTCGACCAACTATGCCAAGTATGGTCCCTGGTTTAAAGTATAACGTGGAGGTTCGTCCGCCAGTTTTTCCAGCATCTTTTGAAATGAGTAATTCTGTAAACGTGCATGCCACTGGTCCTCCCAGATTAAATCATATATTCCCATTGCAAAACCATGTTAGGAGTCAATTTGCAATAAATGCTAATAACTCCATAGTGAGTCATGATCCACATAAATCGCCGTTTACACACAAACAGCCATTGGACAGTGTTGAGAATACAAATATCAGTAACGGACAGCAACATCAGTTTCCTAATCAGCTACCTGGCTTGGTTTCATCTAACCTGCAAAACCATGGACAAGCATCAGAGCTCCAGTTTCTTTCATCTCAGGCTTCTGCAGCATCACAATTTAGTCATGGGGGCACTTTGCAAGGACATGGTACTCCTATAAGTGCATCCGTGTCAAATCCACTGCCTACTATGAAATTCCCTTTGCCAGGCCAATATATCACAAATAACTCTTTACATTTACAAGGGGGAGCATTGCCACTTTTGCCTCCAAGTCGGCCTCCTGCTCTGTCACAAATACCTCATCCTAATACTAGTCCTTTTGTGTCTAGTCAACACCCAACTCCTGCATATTCTAATTTCATTAGTTCACTTATGGCCCAAGGTGTGATCTCAATGACCAATGAGCCCCCTAGACTGGATTCTGTTGGGACCAAATTCAATCCAGATATTCTGAAGGTTCGTCATGAAGTTGCTATCAGTGACTTATATGGTAATCTTCCCAGACAATGCAAAACTTGTGGCCTCCGGTTCAAATGCCAAGATGACCACAGAAGTCATATGGATTGGCATGTGACTAAGAACCGGATGTCTAAAAATCGGAAGCAAAAGCCCTCTCGTAAGTGGTTTGTGAGTGAAAGGATGTGGTTCAGTGGTGCAGAGGCATTGGGAATAGAATCAGTTCCAGGCTTTTGTCCAACTGAGACGAGCAGCGAGGAAAAGAAAGATGATGAAGAGTTGGCTGTGCTGGCTGAAGAGGACCAAAATACATGTGCATTATGTGAAGAGCTTTTTGAGAAGTTTTATAGTGATGAAACAGATGATTGGATGTACAGAGGAGCTGTATACCTTAATGCACCTAAGGGAAAAACAGAAGGCATGGACAGGTCACAGTTAGGCCCCATTATTCATGCTAAATGCAAATCTGAGTCTAGTATGGCCACTTCTTTAGATTTGGGGAGGGATGAAGGGGGCACTTATGAAGCGGGTAGTAGAAGAAAACAGATTCGAGTTTGA 2754 0.4212 MTFIPSHILEEEAMTITTSTEVVSKPPSFLVSRFNSLLTTRVLHAPPSHHEEEIISQIYDSLLSQLTSNLKHVINDLTVIAQQHNRHAKIIATTICSRILKVPADQKLPTLYLLDSIVKKIGHQYVGYFSLRLSEVFCEVYRQVQPNMHSAMRYLFGTWSKVFPPSVLCKIESQLQFSQAVNNSQSSSINPLGASESPRVTHGIHANPKYLRHMELSSAIVDNVGGESLESTGTVGNINKSHHVVDKGIAKASGREEELSEWQRKQYSVHGLKRLRTSMTYSDRLNIEQQHPSPKSLIDAYGTDKSQETSGNEALSIEWLHGNGLDNKVLPTSWQNTEEEDFNWEEMSPALVDRRRNNGFFKERPVIVATNANSSEQNTKKSLSSGSQHHAVDDSSVVAEHAISSSAVHFLLFSLLSFNTYGRVSHGQMSGLQNQINQTLGSGQHFDAWKIGNHPSNSSQHPFNIRGSEMSLLKPPIGNIPNTHVNPYGSRPTMPSMVPGLKYNVEVRPPVFPASFEMSNSVNVHATGPPRLNHIFPLQNHVRSQFAINANNSIVSHDPHKSPFTHKQPLDSVENTNISNGQQHQFPNQLPGLVSSNLQNHGQASELQFLSSQASAASQFSHGGTLQGHGTPISASVSNPLPTMKFPLPGQYITNNSLHLQGGALPLLPPSRPPALSQIPHPNTSPFVSSQHPTPAYSNFISSLMAQGVISMTNEPPRLDSVGTKFNPDILKVRHEVAISDLYGNLPRQCKTCGLRFKCQDDHRSHMDWHVTKNRMSKNRKQKPSRKWFVSERMWFSGAEALGIESVPGFCPTETSSEEKKDDEELAVLAEEDQNTCALCEELFEKFYSDETDDWMYRGAVYLNAPKGKTEGMDRSQLGPIIHAKCKSESSMATSLDLGRDEGGTYEAGSRRKQIRV 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0596 917 Pfam CID domain 60 168 IPR006569 -
Lal18g0596 917 Gene3D - 46 177 IPR008942 -
Lal18g0596 917 MobiDBLite consensus disorder prediction 890 917 - -
Lal18g0596 917 MobiDBLite consensus disorder prediction 568 597 - -
Lal18g0596 917 ProSitePatterns Zinc finger C2H2 type domain signature. 750 770 IPR013087 -
Lal18g0596 917 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 28 892 - -
Lal18g0596 917 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 28 892 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Lal18g0596 917 MobiDBLite consensus disorder prediction 560 597 - -
Lal18g0596 917 CDD CID_Pcf11 59 176 - -
Lal18g0596 917 ProSiteProfiles CID domain profile. 51 179 IPR006569 -
Lal18g0596 917 SUPERFAMILY ENTH/VHS domain 56 176 IPR008942 -
Lal18g0596 917 SMART 558neu5 54 176 IPR006569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0596 Lal-Chr18 5082321 5088596 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0596 657 916 C2H2 Transcription Factor Family AT4G04885 58.846 2.41e-93 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0596 K14400 - gmx:100794796 985.326