Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0547 ATGGGTTGTGTTTGTTCTTGTTTCAGAGTTGATGATTTTGAAGATTATATGAATCCAAATAGTCCTGCATATAGGAACTGTTCGTGTCTTGGTTGCTTCACGCAGAACCTTTTGAATGTGTATATGTTGATATTCCGTAGAGGGGAAGTGCATGCAATTCCCTCATCTATACAGGGAGCGGCATCTATGACTTCTACAGCATCGCTTGATAATTCAATGTCTGATATTTACCGTTCTCTTCCAAGGCCCTTGCCTTATGATGCAGAGCCTAGGGTTTTTCGCTCACAGCGTGATGGACTCGTTTCAAGACGTGAGAAAGGTTCAAGTCATTCACATGAGGAGTCAGAACCTCTAAGAAGTGATGTAGACGTGGACCCAGAATCTTTAAATTCACCTGGCAAATTGAACAATAGTGCCCGTGAAGATGGATCAGCGGAATACTATTCTAAATCCACACTTAGGCTTTCATCTGCAAAACTTACAACTGGAGTTGGGCTCGTCTATTCTTCATCAGAAGAGGAGGATGTGTGCCCAACTTGTCTTGAAGAATACACCGAAGAGAATCCGAAGATAGTGACAAAATGCTCTCATCATTTTCATCTTGGTTGCATTTATGAGTGGATGGAGCGAAGTGATACCTGTCCAGTTTGTGGAAAGGTGATGGCATTCGATGAATCGGAATAA 684 0.4225 MGCVCSCFRVDDFEDYMNPNSPAYRNCSCLGCFTQNLLNVYMLIFRRGEVHAIPSSIQGAASMTSTASLDNSMSDIYRSLPRPLPYDAEPRVFRSQRDGLVSRREKGSSHSHEESEPLRSDVDVDPESLNSPGKLNNSAREDGSAEYYSKSTLRLSSAKLTTGVGLVYSSSEEEDVCPTCLEEYTEENPKIVTKCSHHFHLGCIYEWMERSDTCPVCGKVMAFDESE 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0547 227 ProSiteProfiles Zinc finger RING-type profile. 177 217 IPR001841 -
Lal18g0547 227 SMART ring_2 177 217 IPR001841 -
Lal18g0547 227 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 226 - -
Lal18g0547 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 225 IPR013083 -
Lal18g0547 227 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 226 - -
Lal18g0547 227 MobiDBLite consensus disorder prediction 95 123 - -
Lal18g0547 227 SUPERFAMILY RING/U-box 172 223 - -
Lal18g0547 227 Pfam RING-H2 zinc finger domain 172 217 IPR024766 GO:0008270
Lal18g0547 227 MobiDBLite consensus disorder prediction 95 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0547 Lal-Chr18 4622538 4627103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0547 1 226 C3H Transcription Factor Family AT5G15790 60.606 1.71e-95 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0547 - - gmx:100788192 375.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0547 18 4622538 4627103 Lal18g0547 18 4622538 4627103 ECH
Lal18g0547 18 4622538 4627103 Lal22g1286 22 15580253 15585892 LSH
Lal18g0547 18 4622538 4627103 Lal6g1589 6 18385863 18390687 LSH