Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0541 ATGGCGTTCTTCAATAAGATTGGGAACCTACTGAAGCATTCTGCTGTCAAGCACATCAATCATGATCTGTCTGCGTCCACTCCTTCGATATTCCAGGCAATTAGATCCATGTCAACTGGAAAGGTTTTTGTTGGAGGTATTTCATATAGTACAGATGATATCAGTCTGCGGGAATCTTTTGCTCGCTATGGAGAAGTGATTGATGCAAAGGTTATCATGGATCGTGAAACAGGCAGGTCCCGAGGTTTTGGCTTTGTAACTTTTGCAACAAGTGAGGATGCATCTTCTGCCATTCAGGGCATGGATGGTCAGGATCTTCATGGTCGGAGGGTCAGGGTGAATTATGCTACAGAAAGAGCACGTCCAGGGTTTGGTGGCGGTGGCTATGGTGGTGGTGGCGGCTATGGTGGTGGCGGCGGCTATGGTGGTGGCGGTGGCTATGGAGGTGGCGGTGGCTACGGAGGTGGCGGCTATGGTGGTGGTGGTGGATATGGTGGCAGTGGTGGTAGCGGTGGCTATGGAGGCGATGGTGGTTATGGTGGTAGAAGTGCGGATTCTGGTGCTAGTAATTACCAGTTTAATGAAAACTCTGGTGGTGATCTTGGCCCCGCAAGCGGTGAACCCAGCAGCAATGCCAGCTTCGGGTATGATGGTCAATTTGGTATCAACCAAAATGACAGAACAGTCACAAACGATGGTGAATCTACTGAGCCATTGGAAGAAAATCATCCAAGAGAAAACAATGATGAACCTAATGACTATGCTGAGAATAGAGGATGA 780 0.4885 MAFFNKIGNLLKHSAVKHINHDLSASTPSIFQAIRSMSTGKVFVGGISYSTDDISLRESFARYGEVIDAKVIMDRETGRSRGFGFVTFATSEDASSAIQGMDGQDLHGRRVRVNYATERARPGFGGGGYGGGGGYGGGGGYGGGGGYGGGGGYGGGGYGGGGGYGGSGGSGGYGGDGGYGGRSADSGASNYQFNENSGGDLGPASGEPSSNASFGYDGQFGINQNDRTVTNDGESTEPLEENHPRENNDEPNDYAENRG 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0541 259 SUPERFAMILY RNA-binding domain, RBD 25 150 IPR035979 GO:0003676
Lal18g0541 259 MobiDBLite consensus disorder prediction 233 259 - -
Lal18g0541 259 MobiDBLite consensus disorder prediction 186 232 - -
Lal18g0541 259 PRINTS Eggshell protein signature 36 52 - -
Lal18g0541 259 PRINTS Eggshell protein signature 125 140 - -
Lal18g0541 259 PRINTS Eggshell protein signature 153 163 - -
Lal18g0541 259 PRINTS Eggshell protein signature 198 216 - -
Lal18g0541 259 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 156 - -
Lal18g0541 259 MobiDBLite consensus disorder prediction 186 259 - -
Lal18g0541 259 Gene3D - 15 136 IPR012677 -
Lal18g0541 259 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3 MITOCHONDRIAL 1 156 - -
Lal18g0541 259 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Lal18g0541 259 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
Lal18g0541 259 SMART rrm1_1 41 114 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0541 Lal-Chr18 4575004 4577800 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0541 42 119 Eukaryotic Initiation Factors Gene Family AT1G49760 37.179 1.02e-08 53.9