Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0539 AATCTCATATTTTCTCAATTCTCAACCTTAGTCATGGCTATGTTGTACTCTTTTGTTCCTATGGCTTTCTTCATGGCTCTCTTGGTTCCAGCCATGTCAGCTGGCATGGGCAGGAAATGGCATCGTGCTACTGCAACATTCTATGGAGACATAAATGGTGGTGAAACCATGCAGGGTGCTTGTGGCTATGGTAATCTCTTCAATCAAGGATATGGGCTTGAAACAGCAGCACTAAGCACTGCTCTATTCAACAATGGACTTGCTTGTGGTTCCTGTTATGAGATCAAGTGTGTCAAGGATCCCCAATGGTGCATAAAGGGTGCAGGTACGATAAAAGTCACTGCAACAAATTTTTGCCCTCCAAATTATAGAGATGGCAGTTGGTGTAACCCTCCACAAAAGCACTTTGATCTGTCAATGAAAATGTTCACCACCATTGCCTTGTACAGAGCTGGGATTGTTCCCGTAAAGTATCGTCGCATACCGTGCATCAAAACTGGTGGTGTTAAGTTTGAGCTTACAGGGAACCCTTATTGGTTACAAGTATTGGTGTACAATGTTGCTAATGCTGGTGATGTTTATAATGTGCGCATCAAAGGGTCTAGGAGTACTCGTGACTGGAATCCTATGACACATAATTGGGGAGAACATTGGCATACAGGTCTTAATTTGGTAGGAGAATCCTTGTCATTCCAGGTGACCACTAGTGATGGAAAAATGATGCAGTTTGATAATATTGTTCCTACAAATTGGCAATTTGGACAGACCTACCATAGCATACACAATTTTTAG 792 0.423 NLIFSQFSTLVMAMLYSFVPMAFFMALLVPAMSAGMGRKWHRATATFYGDINGGETMQGACGYGNLFNQGYGLETAALSTALFNNGLACGSCYEIKCVKDPQWCIKGAGTIKVTATNFCPPNYRDGSWCNPPQKHFDLSMKMFTTIALYRAGIVPVKYRRIPCIKTGGVKFELTGNPYWLQVLVYNVANAGDVYNVRIKGSRSTRDWNPMTHNWGEHWHTGLNLVGESLSFQVTTSDGKMMQFDNIVPTNWQFGQTYHSIHNF 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0539 263 PRINTS Expansin signature 70 84 IPR002963 GO:0009664
Lal18g0539 263 PRINTS Expansin signature 97 108 IPR002963 GO:0009664
Lal18g0539 263 PRINTS Expansin signature 111 121 IPR002963 GO:0009664
Lal18g0539 263 PRINTS Expansin signature 126 143 IPR002963 GO:0009664
Lal18g0539 263 PRINTS Expansin signature 143 156 IPR002963 GO:0009664
Lal18g0539 263 PRINTS Expansin signature 167 179 IPR002963 GO:0009664
Lal18g0539 263 PRINTS Expansin signature 179 200 IPR002963 GO:0009664
Lal18g0539 263 PRINTS Expansin signature 216 237 IPR002963 GO:0009664
Lal18g0539 263 PRINTS Expansin signature 245 261 IPR002963 GO:0009664
Lal18g0539 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 58 168 IPR007112 -
Lal18g0539 263 SUPERFAMILY Barwin-like endoglucanases 39 186 IPR036908 -
Lal18g0539 263 Gene3D - 168 263 IPR036749 -
Lal18g0539 263 SMART dpbb_1 75 158 IPR007112 -
Lal18g0539 263 Pfam Expansin C-terminal domain 169 248 IPR007117 -
Lal18g0539 263 Gene3D - 29 163 IPR036908 -
Lal18g0539 263 PANTHER EXPANSIN-A15 22 263 IPR002963 GO:0009664
Lal18g0539 263 PRINTS Expansin/Lol pI family signature 39 54 IPR007118 GO:0005576
Lal18g0539 263 PRINTS Expansin/Lol pI family signature 57 75 IPR007118 GO:0005576
Lal18g0539 263 PRINTS Expansin/Lol pI family signature 79 97 IPR007118 GO:0005576
Lal18g0539 263 PRINTS Expansin/Lol pI family signature 151 167 IPR007118 GO:0005576
Lal18g0539 263 PRINTS Expansin/Lol pI family signature 207 221 IPR007118 GO:0005576
Lal18g0539 263 PRINTS Expansin/Lol pI family signature 245 259 IPR007118 GO:0005576
Lal18g0539 263 Pfam Lytic transglycolase 75 158 IPR009009 -
Lal18g0539 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 178 259 IPR007117 -
Lal18g0539 263 PANTHER EXPANSIN-A21-RELATED 22 263 - -
Lal18g0539 263 SUPERFAMILY PHL pollen allergen 165 259 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0539 Lal-Chr18 4557458 4558335 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0539 8 263 Expansin Gene Family AT5G39300 57.795 4.71e-108 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0539 - - gmx:100789595 375.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0539 18 4557458 4558335 Lal18g0539 18 4557458 4558335 ECH