Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0537 ATGCCCAACTCATATTCTATCCCTAGGAATTCTCAGATAAGAAATAGAAATCGTGGAGACAGAAGCAGGAATGAACCTATCGTGCTGAGCCACGGCTCAGGAAATGGCTCGGGGGAGTGTTACGCTTGCACACAGATAGGTGTGCCAGCGTTCCACTCCACCAGTTGTGACAGTTATCAGCAGCCCAATTGGGAGGCATCAGCTGGCTCCTCATTAGTCCCGATCCAGAATAAATCAAAGGGCTCGACAGTCCGGGTTGAACCCCGGTTCAAATCGGGCTCTTTGATAAAAATTCTGGATCCAAAAAGCAAGAGTGTAATGATATGGAACCGTATGCTGCTGTTAGCACGTGTAATAGCACTAGCCATTGATCCACTGTTCTTCTACGTGTTCTCCATAGGAAGGGATGGGAGGCCATGTCTGTACATGGATGGAAGGTTGGCGCAGGGTGTGATGTTAGCTCGGTCAGGCGTGGATGCAATGCACCTGTGCCACATGTGGATGCAGTTTAATATGGCCTATGTTTCAAGAGAGTCTTTGGTTATTGGGAGTGGGAAACTGGTGTGGAATGCACGTTCCATTGCAGCACATTATGTTCGAGCATTCAAAGGGTTCTGGTTCGATTTGTTTGTCATTCTTCCTATTCCACAGGTAGTAATTTGGTTTGTAGTGCCAAGTTTGATGAAACAAGAGCGAACTAATCTCATCATGACCATAATGCTATTATTGTTTTTGTTTCAAATTATCCCCAAGCTTTACCATTGCATCTACCTGATTAAAAAAATGCAAAAAGTAACAGGCTATGTCTTTGGCACAATTTGGTGGGCCTTTGGTCTCAATCTCATAGTTTATTTCCTTGCTTCTCATATGTTTGGAGGGTGCTGGTATATGCTTGCAATTCAACGTGTTGGGTCATGTGTAAGGGAGCAATGTCATAGAACTCCAGGATGTAATCTCTTAGTTGGATCAATAGGGCATCCTTGTACAGGAAACATTAAACTTGTAGGAAAAGAACCTGTGTGCTTAAGTGCTGATGGACCTTTCAATTTTGGCATTTATGAATGGGCACTTCCAATTATATCCACTGAATCCTTGGCTGTCAAGTTTCTTTATCCTATTTATTGGGGTATGATAAATCTCAGCACTGTTGGCAATGTTCTTGAACCCTCAAGAAATTGGCTAGAAGTGATTTTCAGCATATACGTGGTAATCACTGGACTACTGATTTTCACTTTCTTGGTTGGTAACATCCAGGTATTCTTACATAGTGTAATGGAAAAGAAGAGAAAGATGCAACTGAGAAGTAATGACATGGAATGGTGGATGAGTAGAAGACAAATGCCATCTGAGTTAAAGCAAAGAGTTAGACATTTTGAACGTCATAGATGGGCAGCTATGGGAGGAGAAGATGAGATTGATTTGATCAAAGACTTGCCTGAGGGACTTAGAAGGGATATCAAGCGTTATCTTTCCCTTGATCTCATTAAAAAGGTACCACTGTTTCATACCTTGAGTGATCTTGTTCTTGACAACATCTGTGACAAGGTTAAACCGATAGTCTACACTAAAGATGAAAAGATAATTAGAGAAGGTGACCCTGTACAAAGGATGGTATTCATTGTTCGTGGACGAATAAAGCGCAACCAAAGCCTCAGCAAAGGCGCGGTAGCCTCTAGTATCCTAGTACCAGGAGGGTTTTTTGGAGATGAACTACTTTCCTCGTGCCTTCGCCGCCCTTTTATCGACAGACTTCCAGCCTCCTCAGCCACATTTATATGTATTGAATCAGCTGAAGCTTTTGGCCTTGATGCTGCTGATTTGAAGTACATAACAGAACATTTTCGCTACGAATTTTCGAATGAAAAAGCAAAATCAGCAGCAAGATACTACTCATCCAATTGGAGAACATGGGCTGCTCTCAACATTCAAATTGCTTGGATGCGTTACAAGCAGAGGATTAGAGCTGCATATCTAAGGAACAATGGAATAAACAATAATGACCAAAGGCTAATGCAGTATGCTGCAATGTTTATGTCAATGAAGCCTCATGATCATCTTGAATGA 2064 0.4215 MPNSYSIPRNSQIRNRNRGDRSRNEPIVLSHGSGNGSGECYACTQIGVPAFHSTSCDSYQQPNWEASAGSSLVPIQNKSKGSTVRVEPRFKSGSLIKILDPKSKSVMIWNRMLLLARVIALAIDPLFFYVFSIGRDGRPCLYMDGRLAQGVMLARSGVDAMHLCHMWMQFNMAYVSRESLVIGSGKLVWNARSIAAHYVRAFKGFWFDLFVILPIPQVVIWFVVPSLMKQERTNLIMTIMLLLFLFQIIPKLYHCIYLIKKMQKVTGYVFGTIWWAFGLNLIVYFLASHMFGGCWYMLAIQRVGSCVREQCHRTPGCNLLVGSIGHPCTGNIKLVGKEPVCLSADGPFNFGIYEWALPIISTESLAVKFLYPIYWGMINLSTVGNVLEPSRNWLEVIFSIYVVITGLLIFTFLVGNIQVFLHSVMEKKRKMQLRSNDMEWWMSRRQMPSELKQRVRHFERHRWAAMGGEDEIDLIKDLPEGLRRDIKRYLSLDLIKKVPLFHTLSDLVLDNICDKVKPIVYTKDEKIIREGDPVQRMVFIVRGRIKRNQSLSKGAVASSILVPGGFFGDELLSSCLRRPFIDRLPASSATFICIESAEAFGLDAADLKYITEHFRYEFSNEKAKSAARYYSSNWRTWAALNIQIAWMRYKQRIRAAYLRNNGINNNDQRLMQYAAMFMSMKPHDHLE 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0537 687 Gene3D - 145 423 - -
Lal18g0537 687 MobiDBLite consensus disorder prediction 1 30 - -
Lal18g0537 687 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 2-LIKE 43 687 - -
Lal18g0537 687 CDD CAP_ED 500 610 IPR000595 -
Lal18g0537 687 ProSiteProfiles cAMP/cGMP binding motif profile. 500 579 IPR000595 -
Lal18g0537 687 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 43 687 - -
Lal18g0537 687 SUPERFAMILY Voltage-gated potassium channels 101 421 - -
Lal18g0537 687 Pfam Ion transport protein 108 419 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lal18g0537 687 Gene3D Jelly Rolls 498 616 IPR014710 -
Lal18g0537 687 Gene3D Helix hairpin bin 424 490 - -
Lal18g0537 687 SUPERFAMILY cAMP-binding domain-like 426 614 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0537 Lal-Chr18 4462905 4471489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0537 37 687 Ion Channels AT5G15410 63.407 0.0 874
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0537 K05391 - pop:18107312 953.355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0537 18 4462905 4471489 Lal6g1533 6 17359858 17371325 LSH