Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0536 ATGGGGTTGAAATTTACAAAGCAGGACCCACCCATAATTAATAATAGCCTAAGTTTACATGATCACATGATAAATTACCTGACCAAGAATTTTATTCGTAACTTGGTATCTAAGCAACGAAGAAGAATGCTCATTGCTGGGTATGATCTTGACATGTCATATATAACAGATCAGGTATTAGCAATGTCATTTCCTTCAGAACGTATGAGAGCAGTGTATCGAAATCCTCTTTGGCAAGTCAAATCTGTGTTGGACATGAGACATCAAGACCATTATAAGATTTATAATCTGTGTATAGAAGAAAATTATGATCCAGCACACTTTTATGGACGTGTGGAAGCATATCCATTTGATGACAACCATGTCCCAGCTCTTGAAATGATAAAAGCTTTCTGTGAAAGTGTTGATTTATGGCTATCAAGTGACCCAAAAAATATTGCTGTTATACATTGCATGGCAGGGAAAGGGAGAACTGGCTTAATGGTTTGTGCATACCTAACTTACTGTGGCATGTCAGCAGATGAGGCTCTTCAATTGTATGCAGATAGAAGGACAACAAATAATGAAGGAGTATCAATACCAAGCCAACGTCGTTATGTGGAGTACTGGGAAAGTGTGCTTTCTGTACCAAGGGGCGCTGGAAATGGTGCACCAATTGTGAACTTGCCTCAATCATGTACAAGAGAATTAAGGCGAATCAGACTTTATGATACAGTTAACATTAACACTGTATTCTTTGTTATCTCAGAACTGCAACAGGTACCTGATCAGGTGTACCATCCCCTGGTGGAAGTTTCTAGAAGCTGCTGCAGACAGGTTAAGAAAGGCTATCAGAGAACAAACAGTCCTCGTTATTATATTTCGTATGTTGAAGATTATGAAAACAGAAAGCAATCAGAACCAGAAGAACCTCATGTTGTAGTCCAAATGGACACTGAGAGTCCTATAATATACAAAAAATCATGTTTGGACCATTATTTTGATAAACCTATACGAGTAACCGGAGATGTCCGTGTCATCTTCTACGAGAAAATGATAGGAGGCCGTCTTTTCTACTGTTGTTTTAATACAGCTTTTATTAGGAACAGCTTGCTTCAGCTGACGATAAGGGAAATGGACAAAGTTGGGAAGAAAGGGAAATCAATATGTGGCCCTGCTTTCTGTGTAGAGTTATTGTTTGGCCCTGCAAATACAGGACGTTCATCATCAAGTATATCCATTGATGACAATTTTTCTGATGATTCATTCTAA 1251 0.3845 MGLKFTKQDPPIINNSLSLHDHMINYLTKNFIRNLVSKQRRRMLIAGYDLDMSYITDQVLAMSFPSERMRAVYRNPLWQVKSVLDMRHQDHYKIYNLCIEENYDPAHFYGRVEAYPFDDNHVPALEMIKAFCESVDLWLSSDPKNIAVIHCMAGKGRTGLMVCAYLTYCGMSADEALQLYADRRTTNNEGVSIPSQRRYVEYWESVLSVPRGAGNGAPIVNLPQSCTRELRRIRLYDTVNINTVFFVISELQQVPDQVYHPLVEVSRSCCRQVKKGYQRTNSPRYYISYVEDYENRKQSEPEEPHVVVQMDTESPIIYKKSCLDHYFDKPIRVTGDVRVIFYEKMIGGRLFYCCFNTAFIRNSLLQLTIREMDKVGKKGKSICGPAFCVELLFGPANTGRSSSSISIDDNFSDDSF 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0536 416 CDD PTP_PTEN 51 204 IPR045101 GO:0016791
Lal18g0536 416 ProSiteProfiles C2 tensin-type domain profile. 241 396 IPR014020 -
Lal18g0536 416 Gene3D Protein tyrosine phosphatase superfamily 27 209 IPR029021 -
Lal18g0536 416 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 122 184 IPR000387 GO:0016311|GO:0016791
Lal18g0536 416 ProSiteProfiles Phosphatase tensin-type domain profile. 41 210 IPR029023 -
Lal18g0536 416 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 1 409 - -
Lal18g0536 416 Gene3D - 281 398 - -
Lal18g0536 416 SMART PTEN_C2_2 223 395 IPR014020 -
Lal18g0536 416 Pfam C2 domain of PTEN tumour-suppressor protein 319 393 IPR014020 -
Lal18g0536 416 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 300 395 IPR035892 -
Lal18g0536 416 PANTHER BNAC03G16750D PROTEIN 1 409 - -
Lal18g0536 416 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 47 207 IPR029021 -
Lal18g0536 416 ProSitePatterns Tyrosine specific protein phosphatases active site. 149 159 IPR016130 GO:0016311|GO:0016791
Lal18g0536 416 Pfam Tyrosine phosphatase family 130 183 IPR026893 GO:0004721
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0536 Lal-Chr18 4453676 4457864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0536 1 396 Protein tyrosine phosphatase (PTP) family AT5G39400 66.749 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0536 K01110 - gmx:100809938 689.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0536 18 4453676 4457864 Lal22g1251 22 14724869 14737016 LSH