Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0534 ATGGCTCTTCTTGGACTTCTTCTGGGAATTCTCTTCATGCTGTCGCATGTTTATGCCTATGGCTATGGCGGTTGGACTAATGCTCATGCCACCTTTTATGGCGGTAGCGATGCTTCAGGAACAATGGGTGGAGCTTGTGGCTATGGAAACCTATACAGCCAAGGATATGGGACTAATACTGCAGCACTGAGCACAGCACTGTTCAACAATGGCTTGAGCTGTGGTGCATGTTTTGAAATTAAATGCGTGAGTGATCCACAATGGTGCCTACCTGGCTCAATAACAGTCACTGCCACCAATTTTTGTCCACCAGGTGGGTGGTGTGACCCTCCACAACACCATTTTGATCTTTCTCAACCCATTTTCCAGCACATTGCTCAATATAAGGCTGGGATTGTACCAGTCATTTACAGAAGAGTAAGGTGCAGAAGAAGAGATGGAATAAGGTTTACAATCAATGGTCATTCATACTTCAATTTGGTCCTTGTGACAAATGTTGGAGGTGCTGGTGATGTACATTCTTTGGCCATAAAAGGTTCAAGAACTAGATGGCAAGCCATGTCAAGGAATTGGGGCCAAAATTGGCAGAGCAACTCCTACCTGAATGGCCAAAGTCTTTCATTTTTAGTCACAACTAGTAATGGCCATAGTGTGGCCTCATACAATGTTGCCCCACCTAGTTGGTCCTTTGGCCAAACCTACATTGGAAAGCAGTTCAACTACTAA 726 0.4477 MALLGLLLGILFMLSHVYAYGYGGWTNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVSDPQWCLPGSITVTATNFCPPGGWCDPPQHHFDLSQPIFQHIAQYKAGIVPVIYRRVRCRRRDGIRFTINGHSYFNLVLVTNVGGAGDVHSLAIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFLVTTSNGHSVASYNVAPPSWSFGQTYIGKQFNY 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0534 241 SUPERFAMILY Barwin-like endoglucanases 24 165 IPR036908 -
Lal18g0534 241 Pfam Lytic transglycolase 60 137 IPR009009 -
Lal18g0534 241 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 236 IPR007117 -
Lal18g0534 241 PANTHER EXPANSIN-A15 5 240 IPR002963 GO:0009664
Lal18g0534 241 PRINTS Expansin signature 55 69 IPR002963 GO:0009664
Lal18g0534 241 PRINTS Expansin signature 82 93 IPR002963 GO:0009664
Lal18g0534 241 PRINTS Expansin signature 94 104 IPR002963 GO:0009664
Lal18g0534 241 PRINTS Expansin signature 105 122 IPR002963 GO:0009664
Lal18g0534 241 PRINTS Expansin signature 122 135 IPR002963 GO:0009664
Lal18g0534 241 PRINTS Expansin signature 146 158 IPR002963 GO:0009664
Lal18g0534 241 PRINTS Expansin signature 158 179 IPR002963 GO:0009664
Lal18g0534 241 PRINTS Expansin signature 193 214 IPR002963 GO:0009664
Lal18g0534 241 PRINTS Expansin signature 222 238 IPR002963 GO:0009664
Lal18g0534 241 SUPERFAMILY PHL pollen allergen 147 235 IPR036749 -
Lal18g0534 241 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 147 IPR007112 -
Lal18g0534 241 PANTHER EXPANSIN 5 240 - -
Lal18g0534 241 Gene3D - 14 143 IPR036908 -
Lal18g0534 241 Gene3D - 147 239 IPR036749 -
Lal18g0534 241 Pfam Expansin C-terminal domain 148 225 IPR007117 -
Lal18g0534 241 PRINTS Expansin/Lol pI family signature 24 39 IPR007118 GO:0005576
Lal18g0534 241 PRINTS Expansin/Lol pI family signature 42 60 IPR007118 GO:0005576
Lal18g0534 241 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Lal18g0534 241 PRINTS Expansin/Lol pI family signature 130 146 IPR007118 GO:0005576
Lal18g0534 241 PRINTS Expansin/Lol pI family signature 184 198 IPR007118 GO:0005576
Lal18g0534 241 PRINTS Expansin/Lol pI family signature 222 236 IPR007118 GO:0005576
Lal18g0534 241 SMART dpbb_1 60 137 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0534 Lal-Chr18 4429618 4431546 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0534 1 239 Expansin Gene Family AT2G03090 77.016 1.58e-137 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0534 K20628 - gmx:100791784 450.669