Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0518 ATGGATGTTAGCTCTGAGTGGAGCTGGGAGCAGGATAAAGCATTTGAAAGTGCCTTGGTAAATCATCCCGAGGATGCCCCTGATCGATGGGAGAAGATTGTGGATGATGTACCTGGGAAAACAATAGAAGAAATTAAACAGCATTATGAGCTCTTGGTTGAAGATATTAACCAGATCGAATCTGGTTGTGTGCCTCTACCGTCTTATAATTCTTCTTTGGAGGGCTCAGCAAGCCGTTCTAGTGATGAAGGAGCTGGCAAGAAGGGTGGCCATCAGAATAGTGGTTCTAATCATGGAACTAATACATCAAGATCAGACCAGGAACGGCGAAAGGGTATTGCTTGGACAGAGGATGAACACAGGCAAATTTTCCCCTTTGATTCTTGTGACTGTTTTAGTGTCAAAACTCAAAACACTGATTTTTGTGGAATGATTTTTTGTTTTTCTTGGTATGAGAGACGGTTATTTCTTCTTGGCTTGGAAAAGTATGGAAAAGGTGACTGGCGGAGTATATCGAGGAACTTGGTGTTGACAAGAAACCCTACACAAGTTGCAAGCCATGCCCAAAAATACTTCATTCGTTTGAACTCGATGAATAAAGATAGAAGGCGGTCCAGCATACATGATATTACGAGTATCGACAATGGAGATGTTTCAGCATCTCAAGTGCCAATTACTGGTCAAACCAATGATTCTGAAGCCAATTCTACTGGCAAACCAGGCAAGCAAGTGCCTCCAGCCTCAATCGGAGTTCCAAGCGTAGGAATATATGCCGCTCCTACCATCAGGCAACCAATAGGAGGACCACTAGTATCGGCTGTTGGAACCCCGATGAATCTTCCTGCCGCTGGACACATGGTATATGGTGTCCGAGCCCCGATTCCTGGTGCACCAATGAACATTAGTCCTATGGCATACACTATGTCACACACATCTGTTCCTCACAGTTATCAGAAGAATACTATTGATATTTAG 975 0.4379 MDVSSEWSWEQDKAFESALVNHPEDAPDRWEKIVDDVPGKTIEEIKQHYELLVEDINQIESGCVPLPSYNSSLEGSASRSSDEGAGKKGGHQNSGSNHGTNTSRSDQERRKGIAWTEDEHRQIFPFDSCDCFSVKTQNTDFCGMIFCFSWYERRLFLLGLEKYGKGDWRSISRNLVLTRNPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSIDNGDVSASQVPITGQTNDSEANSTGKPGKQVPPASIGVPSVGIYAAPTIRQPIGGPLVSAVGTPMNLPAAGHMVYGVRAPIPGAPMNISPMAYTMSHTSVPHSYQKNTIDI 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0518 324 Gene3D - 148 198 - -
Lal18g0518 324 SUPERFAMILY Homeodomain-like 5 61 IPR009057 -
Lal18g0518 324 Gene3D - 2 66 - -
Lal18g0518 324 PANTHER TRANSCRIPTION FACTOR KUA1 148 304 - -
Lal18g0518 324 PANTHER TRANSCRIPTION FACTOR KUA1 4 122 - -
Lal18g0518 324 MobiDBLite consensus disorder prediction 70 110 - -
Lal18g0518 324 CDD SANT 6 53 IPR001005 -
Lal18g0518 324 SUPERFAMILY Homeodomain-like 152 197 IPR009057 -
Lal18g0518 324 SMART sant 3 55 IPR001005 -
Lal18g0518 324 SMART sant 144 194 IPR001005 -
Lal18g0518 324 Pfam Myb-like DNA-binding domain 149 192 IPR001005 -
Lal18g0518 324 MobiDBLite consensus disorder prediction 211 242 - -
Lal18g0518 324 MobiDBLite consensus disorder prediction 209 246 - -
Lal18g0518 324 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 152 194 IPR006447 GO:0003677
Lal18g0518 324 ProSiteProfiles Myb-like domain profile. 5 53 IPR001005 -
Lal18g0518 324 PANTHER HOMEODOMAIN-LIKE TRANSCRIPTIONAL REGULATOR-RELATED 148 304 - -
Lal18g0518 324 PANTHER HOMEODOMAIN-LIKE TRANSCRIPTIONAL REGULATOR-RELATED 4 122 - -
Lal18g0518 324 CDD SANT 152 192 IPR001005 -
Lal18g0518 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 152 196 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0518 Lal-Chr18 4290051 4292847 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal18g0518 Myb_DNA-binding 9.8e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0518 - - gmx:100779792 443.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0975 22 8167626 8173771 Lal18g0518 18 4290051 4292847 LSH
Lal6g1101 6 8161131 8165040 Lal18g0518 18 4290051 4292847 LSH