Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0502 ATGAAACGCTGCAATTCTTCCATATCAAGTTTTTGCAGGGAAGGGAAAATTGATCTTGCGCGCAAGTTGTTTGATGAAATGTCTGAACGGGACATTGGTTTGTGGACTACAATGATAAGTGGGTACGTCAAGTGTGGTATGATTAAAGAAGCAAGGAAGCTATTTGATAGACTAGATTCAAAGAAAAATGTGGTCACTTGGACTGCTATGGTAGGTGGGTACATAAAGTTTAATCAAATTAAGGAAGCTGAGAGGTTGTTTTATGAGATGCCAATGAGGAATGTTGTGTCTTGGAACACGATGGTTGATGGGTATGCGCGAAATGGCCAAACCCAGATGGCTTTGGATTTGTTTAGGAGGATGCCTGAGAGGAATCTGGTGTCGTGGAATACAATCATAACGGCGTTGGCTCAGTGTGGGAGGATTGAGGATGCACAGAGGCTTTTTAATGAGATGCAAGAAAGGGATGTGATTTCGTGGACTACTATGGTCACCGGGTTGTCTAAAAGTGGGAGAATTGATGATGCTCGGGCACTTTTTGATAGGATGCCTGTCCGTAACGTGGTTTCGTGGAATGCAATGATCACGGGTTATGCGCAAAATAGGAGACTGGGTGAGGCTCTAGAGTTGTTTGAGAGAATGCCCGAGAGGGACATGCCTTCATGGAATACAATTATCACTGGTTTCATTCAGAATGGAGACTTGAATCTTGCAGAGAAGTTATTTGATGAAATGCCACAAAAGAATGTCATTACTTGGACTGCAATGATGACAGGGTATGTGCAACATGGCCTAAGCGAAGAAGCATTGAAAATGTTTAATAAAATGCAAGCTCTTGACGATGGATTAAAACCTAACACCGGAACCTTCGTGACAGTGTTAGGTGCTTGTAGTGACTTAGCTGGACTTACTGAGGGACAACAAATTCATCAACTAATAAGTAAAACAGTTTTTCAGGATAGCGCATATGTCGTGTCCGCGCTGATAAATATGTACTCAAAATGTGGAGAGTTGCACATTGCTAGGAAAATGTTTGATGATGGTTTATTAAGCCAAAGGGATTTGATATCTTGGAATGGTATGATTGCTGCCTATGCACACCATGGATATGGCAAGGAGGCAATTAATCTATATAATGAGATGCAAGATTTAGGTTTCCAAGCTAATGATGTCACCTTTGTTGGACTTCTCACAGCTTGCAGCCATGCTGGTTTAGTTGAGGAGGGCCTTAAATACTTTGATGAGCTTCTAAAAAACAGATTTATACAAGTTAGAGAAGACCACTATGCATGTTTGATAGATCTTTGTGGCCGGGCAGGAAAGTTGAAAGAAGCTTACAATATCATTGAGGGACTTGGGAAAGAGGCTTCATTGTCTGTTTGGGGAGCTCTCCTAGCAGGATGTAATGTGCACGGAAACGAAGGTATCGGGAAGCTTGTTGCTAAGAACATTTTGAAAATTGAACCAGACAATGCAGGAACTTATTTATCACTTTCAAATATGTATGCTTCAGTAGGGAAGTGGAAAGAAGCTGCCAATGTCAGGATGAAAATGAAGGACAAGGGGTTAAAGAAACAGCCAGGTTGTAGTTGGATTGAAGTTGGGAATATAGTGCAAGTATTTGTAGTCGGTGATAAGTCACATTCTCAATTTGAGCGGCTTGGGTATTTACTTCTTGATTTACATAGCAAAATGAAGAAGCCTGGGGACAAGACAGATGATGATTTTTTAGTTGTGTACTTTGGCCTCCATCCCCCTCCCAAACAAGCACACTAA 1776 0.4144 MKRCNSSISSFCREGKIDLARKLFDEMSERDIGLWTTMISGYVKCGMIKEARKLFDRLDSKKNVVTWTAMVGGYIKFNQIKEAERLFYEMPMRNVVSWNTMVDGYARNGQTQMALDLFRRMPERNLVSWNTIITALAQCGRIEDAQRLFNEMQERDVISWTTMVTGLSKSGRIDDARALFDRMPVRNVVSWNAMITGYAQNRRLGEALELFERMPERDMPSWNTIITGFIQNGDLNLAEKLFDEMPQKNVITWTAMMTGYVQHGLSEEALKMFNKMQALDDGLKPNTGTFVTVLGACSDLAGLTEGQQIHQLISKTVFQDSAYVVSALINMYSKCGELHIARKMFDDGLLSQRDLISWNGMIAAYAHHGYGKEAINLYNEMQDLGFQANDVTFVGLLTACSHAGLVEEGLKYFDELLKNRFIQVREDHYACLIDLCGRAGKLKEAYNIIEGLGKEASLSVWGALLAGCNVHGNEGIGKLVAKNILKIEPDNAGTYLSLSNMYASVGKWKEAANVRMKMKDKGLKKQPGCSWIEVGNIVQVFVVGDKSHSQFERLGYLLLDLHSKMKKPGDKTDDDFLVVYFGLHPPPKQAH 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0502 591 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 31 65 IPR002885 -
Lal18g0502 591 Pfam E motif 471 533 IPR046848 -
Lal18g0502 591 Pfam PPR repeat family 248 297 IPR002885 -
Lal18g0502 591 Pfam PPR repeat family 354 401 IPR002885 -
Lal18g0502 591 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 156 186 IPR002885 -
Lal18g0502 591 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 249 285 IPR002885 -
Lal18g0502 591 Pfam PPR repeat 8 28 IPR002885 -
Lal18g0502 591 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 354 388 IPR002885 -
Lal18g0502 591 SUPERFAMILY TPR-like 124 528 IPR011990 GO:0005515
Lal18g0502 591 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 187 221 IPR002885 -
Lal18g0502 591 Gene3D Tetratricopeptide repeat domain 354 539 IPR011990 GO:0005515
Lal18g0502 591 Pfam PPR repeat 158 187 IPR002885 -
Lal18g0502 591 Pfam PPR repeat 96 125 IPR002885 -
Lal18g0502 591 Pfam PPR repeat 189 218 IPR002885 -
Lal18g0502 591 Pfam PPR repeat 429 450 IPR002885 -
Lal18g0502 591 Pfam PPR repeat 127 156 IPR002885 -
Lal18g0502 591 Pfam PPR repeat 65 94 IPR002885 -
Lal18g0502 591 Pfam PPR repeat 35 60 IPR002885 -
Lal18g0502 591 Pfam PPR repeat 325 346 IPR002885 -
Lal18g0502 591 PANTHER BNAA05G08880D PROTEIN 35 560 - -
Lal18g0502 591 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 491 525 IPR002885 -
Lal18g0502 591 TIGRFAM PPR: pentatricopeptide repeat domain 221 248 IPR002885 -
Lal18g0502 591 TIGRFAM PPR: pentatricopeptide repeat domain 189 219 IPR002885 -
Lal18g0502 591 TIGRFAM PPR: pentatricopeptide repeat domain 35 61 IPR002885 -
Lal18g0502 591 TIGRFAM PPR: pentatricopeptide repeat domain 251 278 IPR002885 -
Lal18g0502 591 TIGRFAM PPR: pentatricopeptide repeat domain 5 32 IPR002885 -
Lal18g0502 591 TIGRFAM PPR: pentatricopeptide repeat domain 127 157 IPR002885 -
Lal18g0502 591 TIGRFAM PPR: pentatricopeptide repeat domain 65 95 IPR002885 -
Lal18g0502 591 TIGRFAM PPR: pentatricopeptide repeat domain 356 389 IPR002885 -
Lal18g0502 591 TIGRFAM PPR: pentatricopeptide repeat domain 158 188 IPR002885 -
Lal18g0502 591 TIGRFAM PPR: pentatricopeptide repeat domain 96 127 IPR002885 -
Lal18g0502 591 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 94 128 IPR002885 -
Lal18g0502 591 Gene3D Tetratricopeptide repeat domain 156 218 IPR011990 GO:0005515
Lal18g0502 591 Gene3D Tetratricopeptide repeat domain 219 311 IPR011990 GO:0005515
Lal18g0502 591 Gene3D Tetratricopeptide repeat domain 1 93 IPR011990 GO:0005515
Lal18g0502 591 Gene3D Tetratricopeptide repeat domain 94 155 IPR011990 GO:0005515
Lal18g0502 591 PANTHER OS01G0913400 PROTEIN-RELATED 35 560 - -
Lal18g0502 591 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1 30 IPR002885 -
Lal18g0502 591 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 389 423 IPR002885 -
Lal18g0502 591 SUPERFAMILY TPR-like 319 513 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0502 Lal-Chr18 4141632 4143716 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0502 7 578 Glycoside Hydrolase AT3G49170 30.293 1.67e-95 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0502 - - gmx:100792086 1005.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0949 6 6605483 6616587 Lal18g0502 18 4141632 4143716 LSH
Lal22g0824 22 6157946 6164084 Lal18g0502 18 4141632 4143716 LSH
Lal6g0949 6 6605483 6616587 Lal18g0502 18 4141632 4143716 PCT
Lal18g0502 18 4141632 4143716 Lal6g0949 6 6605483 6616587 PCT