Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0486 ATGGCATCCCTCAGGTTTTCTTCTGCTAAACAATTACGGGGTTCGATTAAGCATTCTTTGAACCTTGAATTAGTTCAACAATACCACCATAGTATTATGCCTATGAGCCATGCAACAATTGCAAGGTTGCCAAGTGATTCACTGAGAAATCTTTATTCCATAGGAGAGTTAAAGCCATCTCGAAGTTTTGCGAGGAATAAGTTCAGTAATTTGGCTTCTGAATCACTTGTTAGTAATACCAAAATCAATGCATCATTTATTGCTAAGTTCTCTAGCTTTGGTTTCCGGAGTACTCTTACCTTTGCTTCTTCGATGACCAGCATGTTGAATTGCCGAACATATTCATCATCTGTGGGTGGGAAAGGAAACAGTGATGGTGGCACTGACATTCAAGCTGGTTCTGGTGCAAGTGACACTAATGTTTTCGGTGATACAGTTATTGCTGGTGATTGGCCCGAGAAGATTAGAGATGCTTGGAAGAATGTGGTAGAGACTGCAACTCATGCTGGGGGAAAGGTAAAAGATTCCTATGACGGCCTGACTCCATATGGTCAACAGTTGCTTGATTCACATCCATATCTTAAAGAGGTGGTTATTCCGGTTGGCGGTACATTATCAGCTACTCTAATAGCATGGGCTGTGATGCCTAGGATTTTGAGGAAATTTCACCAATATGCACTGCAAAGTCCTGTTTCCGTGTTTCCTGGGAGCATATCTGGGGAGCCAGTTCCTTATGAGAAAAGCTTTTGGGGTGCCCTAGAAGACCCAGTGCGTTATTTAGTTACCTTCATAGCATTCTCACAAATAGGTGTAATGGTAGCTCCCACAACTATAGCCTCACAATATCTTACACCAGCTTGGAGGGGTGCAGTGATACTTTCATTTGTATGGTTTTTGCATAGATGGAAAACAAATGTTTTTGCACGTACATTGTCCGGTAAAGCATTACTTGGGCTTGATAGGGAAAAGTTGCTTGCTCTAGACAAAATATCATCTATTGGTCTTTTTGTGATTGGCATAATGGCTTTGGCTGAGGCTTGTGGTGTGGCTGTGCAGTCTATTGTAACTGTTGGTGGTATAGGAGGAGTTGCTACTGCTTTTGCTGCGAAAGACATTCTAGGCAATGTGTTCAGTGGTTTATCTATGCAGTTTTCAAAGCCCTTTTCAATTGGAGATACTATAAAAGCTGGCTCGGTAGAAGGTCAAGTGATGGAAATGGGTCTTACTACCACGTCATTGCTGAGTGCTGAGAAGTTCCCAGTCATAGTGCCAAACTCATTTTTTTCTAGCCAGGTAATAGTGAACAAGTCCCGTGCCGAATATCGTGCTATTATTACCAAAATTCCACTGCATATTGAGGATTTAAGTAAGATTCCCCAGATATCGGATGATGTGAAGAGCATGCTGAGATCAAATGCTAAGGTTTTCATAGGGAAAGATGTTCCCTACTGTTTCTTGTCCCGTATCGAAAGTTCATTTGCAGAATTAACACTTGGATACAACCTCAAACACATGCGCAAAGATGAGTTATTCTCTGCAGAACAAGATGTTCTTCTGCAAGCAGTTCAGATTATTAAGAATCACGGGGTGGCTCTTGGCAGCACATTGCAAGACATTTCTAATAAGTGA 1629 0.4168 MASLRFSSAKQLRGSIKHSLNLELVQQYHHSIMPMSHATIARLPSDSLRNLYSIGELKPSRSFARNKFSNLASESLVSNTKINASFIAKFSSFGFRSTLTFASSMTSMLNCRTYSSSVGGKGNSDGGTDIQAGSGASDTNVFGDTVIAGDWPEKIRDAWKNVVETATHAGGKVKDSYDGLTPYGQQLLDSHPYLKEVVIPVGGTLSATLIAWAVMPRILRKFHQYALQSPVSVFPGSISGEPVPYEKSFWGALEDPVRYLVTFIAFSQIGVMVAPTTIASQYLTPAWRGAVILSFVWFLHRWKTNVFARTLSGKALLGLDREKLLALDKISSIGLFVIGIMALAEACGVAVQSIVTVGGIGGVATAFAAKDILGNVFSGLSMQFSKPFSIGDTIKAGSVEGQVMEMGLTTTSLLSAEKFPVIVPNSFFSSQVIVNKSRAEYRAIITKIPLHIEDLSKIPQISDDVKSMLRSNAKVFIGKDVPYCFLSRIESSFAELTLGYNLKHMRKDELFSAEQDVLLQAVQIIKNHGVALGSTLQDISNK 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0486 542 Gene3D - 387 435 IPR023408 -
Lal18g0486 542 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 1, MITOCHONDRIAL-RELATED 83 538 - -
Lal18g0486 542 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 285 370 IPR011014 GO:0016020
Lal18g0486 542 Pfam Mechanosensitive ion channel 329 531 IPR006685 GO:0016020|GO:0055085
Lal18g0486 542 SUPERFAMILY Sm-like ribonucleoproteins 371 436 IPR010920 -
Lal18g0486 542 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 83 538 - -
Lal18g0486 542 Gene3D - 286 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0486 Lal-Chr18 4028930 4034303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0486 151 535 Mechanosensitive Ion Channel Family AT4G00290 68.831 0.0 569
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0486 K22047 - gmx:100789047 786.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0486 18 4028930 4034303 Lal18g0486 18 4028930 4034303 ECH
Lal22g0877 22 6820483 6825276 Lal18g0486 18 4028930 4034303 LSH