Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0475 ATGTATAGAATAATATCCACGCCGGCTTCTAAGTTCCGCCAACTCCGGCGAGTCCACTCCAAAAACACCACCGCCGCTACCGACGTGGAACACGCCCACCATATCCTATGGCGATACCAGATCCTAGACCCGGACAGCGACATTGTAACGTATTGGAACAAGGTTTTCCTTGTTACGAGTCTTCTTGCACTATTTGTCGATCCTCTCTACTTTTTTCTACCAACCGTTGGTGGCCCTGCGTGCATGAAAGCGGATCACGATCTTCGTATCTTGATCACTGTTCTTCGTTCATTTGCGGATCTTTTTTACGTTCTTCATATGATTATGAAGTTTCGTACCGCTTTTGTTGCACCTAATTCTAGAATCGTTGGTCGCGGTGAACTTGTTATGGATCCTCGTCAAATTGCTATGCGTTACTTGAAGTCTGATTTTATTGTGATTTGGTTAGTCATTCCAGGGAGTTCAAATGCAAGATCATCTAATCATGCCAACACTACACTTGCACTTTTTGTTCTTATTCAATATGTTCCTAGACTTTTTCTTATCTTCCCATTGAACCAGCGTATCCAGAAAACCACCGGTGTCATCGCCAAGACTCCTTGGATTGGAGCCGCTTATAATCTAGTTCTCTACATGTTAGCTAGTCATGTTACAGGAGCAACTTGGTATCTATCATCAATAGGGAGACAATTTAGCTGCTGGAAAACACAGTGCGAGCTTGAAAATAAATCACATGCCTTGGCTTGCTTACCTAGTTTTCTTGATTGTAGTAGTGTGGAACTTCCTGAAAGGCAATACTGGCTAAATATAACACGTGTGATTAGCAAATGTGATGCAAAGAGCAAGATCAACATCAAATATAAGTTTGGTATGTTTGCAGATGCATTCTTAAATGATGTTGTCACTACCAGTTTTAAGGAAAGATACTTCTATTGTCTTTGGTGGGGCTTACGAAATTTAAGCTCATATGGACAGAATTTGGATACTACCACTTACCTTCTGGAGACACTATTTTGCATCATCTTATGCATTGCTGGGTTAATTCTCTTTTCACTTTTGATTGGAAACATGCAGACGTATTTGCAATCGATGTCAGTTAGACTTGAAGAATGGAGGATTCGTAAAAATGACACAGAGGAGTGGATGAGGCATCGTCAGTTACCAACAGATTTGCAGGAACGTGTTCGTCGCTTTGTGCAGTATAAATGGCTAGCAACCAGAGGAGTTAATGAAGAGTCCATACTTCTTTCATTACCTATGGATCTTCGTCGTGAAATTCAACATCATTTGTGTCTATCTCTTGTTCGCCGTGTTCCTTTTTTCTCACAAATGGATGATCAACTTCTTGATGCAATTTGTGAACGCCTTGCATCATCACTAAGTACAGCAGATACATACATTTTTCGAGAGGGTGATCCAGTTGATGAAATGCTATTCATTATTAGAGGGCAATTAGAGAGTTCCACAACTAATGGAGGAAGATCTGGATTCTTCAATTCCATCACACTCAGGCCTGGTGATTTTTGTGGAGAAGAATTGTTAACATGGGCCTTAATGCCAAACTCCACCCTCAACTTACCTTCTTCAACTCGTACTATCAAAGCTATTTCTGAAGTTGAAGCTTTTTCACTACAAGCAGAAGATCTCAAGTTTGTAGCAAGTCAATTCAAGCGCCTCCATAGCAAGAAGCTTCAACATGCATTTAGATATTATTCACATCAATGGAGGACATGGGGTTCTTGCTTTATACAAGCTGCATGGAGAAGGTATAAGAAAAGGAAGGCAACAAGGGAGTTATCCATGAAAGAGAGTTACTACTACTTGGAAATGAATGAGACAGAGAGTGATTATATGGAAAGGGATGATACTGAAATTTATGAGGGTGGTGAGATTGGAAGATCATTAGGGAATGTCAAAAAGGTTCAAAATTTTGGTGCAACTGTTTTGGCCTCAAAGTTTGCAGCAAATACAAAGAAAGGGAATCACAAGATTACTGATAGGGACCCTGTACCACAATTGTTTAAGCCAGATGAACCTGATTTCTCTATGGACCATGGGGAAGTTTAG 2067 0.4049 MYRIISTPASKFRQLRRVHSKNTTAATDVEHAHHILWRYQILDPDSDIVTYWNKVFLVTSLLALFVDPLYFFLPTVGGPACMKADHDLRILITVLRSFADLFYVLHMIMKFRTAFVAPNSRIVGRGELVMDPRQIAMRYLKSDFIVIWLVIPGSSNARSSNHANTTLALFVLIQYVPRLFLIFPLNQRIQKTTGVIAKTPWIGAAYNLVLYMLASHVTGATWYLSSIGRQFSCWKTQCELENKSHALACLPSFLDCSSVELPERQYWLNITRVISKCDAKSKINIKYKFGMFADAFLNDVVTTSFKERYFYCLWWGLRNLSSYGQNLDTTTYLLETLFCIILCIAGLILFSLLIGNMQTYLQSMSVRLEEWRIRKNDTEEWMRHRQLPTDLQERVRRFVQYKWLATRGVNEESILLSLPMDLRREIQHHLCLSLVRRVPFFSQMDDQLLDAICERLASSLSTADTYIFREGDPVDEMLFIIRGQLESSTTNGGRSGFFNSITLRPGDFCGEELLTWALMPNSTLNLPSSTRTIKAISEVEAFSLQAEDLKFVASQFKRLHSKKLQHAFRYYSHQWRTWGSCFIQAAWRRYKKRKATRELSMKESYYYLEMNETESDYMERDDTEIYEGGEIGRSLGNVKKVQNFGATVLASKFAANTKKGNHKITDRDPVPQLFKPDEPDFSMDHGEV 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0475 688 ProSiteProfiles cAMP/cGMP binding motif profile. 440 570 IPR000595 -
Lal18g0475 688 SUPERFAMILY Voltage-gated potassium channels 43 362 - -
Lal18g0475 688 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 30 684 - -
Lal18g0475 688 CDD CAP_ED 440 571 IPR000595 -
Lal18g0475 688 Gene3D - 57 365 - -
Lal18g0475 688 MobiDBLite consensus disorder prediction 660 688 - -
Lal18g0475 688 SMART cnmp_10 440 571 IPR000595 -
Lal18g0475 688 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 18 30 684 - -
Lal18g0475 688 Pfam Cyclic nucleotide-binding domain 463 551 IPR000595 -
Lal18g0475 688 SUPERFAMILY cAMP-binding domain-like 370 565 IPR018490 -
Lal18g0475 688 Gene3D Helix hairpin bin 367 431 - -
Lal18g0475 688 Gene3D Jelly Rolls 438 558 IPR014710 -
Lal18g0475 688 Pfam Ion transport protein 50 367 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0475 Lal-Chr18 3934022 3937165 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0475 10 688 Ion Channels AT5G14870 66.667 0.0 973
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0475 K05391 - gmx:100802812 1183.32