Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0474 ATGGCTTTCAGAAAGGGTGACACTGATGGTGCCAGTCCCGGAAAAATCTTCATTGGTGGGTTAGCTAAAGACACAACCTTGGAAATATTTGTGAAGTACTTTGAGAAGTACGGAGAGATAACGGACTCGGTGATAATGAAGGATCGAGAATCGGGTAGGCCCAGGGGTTTTGGGTTCATCACCTACGCAGATCCTTCAGTTGTTGACCATGTCATTCAGGAGGACCATGTTATCAATGGCAAACAGGTGGAGATTAAGAGGACTATTCCGAAATCTTCATCTCAAGCTAACGACTTCAAAACAAAGAAGATTTTTGTTGGTGGTATTCCAACAGCGGTATCTGAAGATGAGCTCAAGAGTTTCTTCTCCAAGTATGGGAAGGTTGTGCAACATGAAATAATACGTGACCATGCTACAAAACGTTCCCGGGGTTTTGGATTTATAGTTTTTGACAATGATAGGGATGTTGATAACATCTTGTCGGATGGGAATATGATTGATATGGCTGGTACTCAGGTTGAGATCAAGAAGGCCGAGCCAAAGAAATCCTCAAACCCTGCTTCTCTTCCTCCATTTACTAGTGACTCTAGGGCACGTTCTTACAATAATGCTTTTGATGGATTTGGCGATTCTTATGGAAGTTTTTCTAATAGCAGTTATGGCCCCAGTTCCTATAGGTCTCTTGGAGGTTTTGGTGCTAGGTACGGTGATTATGGCGGGTATGGTGGCGGTGATGACTTCAGTGGTAGTTTTGGGGGTTATGGTGGTGCTGCTGGTGCCGCTGGTGGATATGCAGGCTACCGAGCAGAACCATCATTTGGCTACTCTAGTCGATATGGTTCCTACATGGGGGCCCTTGGTGGTGGATATGGTGGCGGTGGGTTAGGTACATATGCACGAGGTGGTGGGGGCTATGGAAGCTATGGTGGTCCTGGCACTAGTGGGGGTTATGAGTCAGGTCCTGGTGCCGGTTATGGTGGGGCTGGTGGAATGTATGCTAGTAGGGGAAGTTACGGTGGCAGTAGTCGTTACCACCCATATGCAAGATAG 1050 0.4676 MAFRKGDTDGASPGKIFIGGLAKDTTLEIFVKYFEKYGEITDSVIMKDRESGRPRGFGFITYADPSVVDHVIQEDHVINGKQVEIKRTIPKSSSQANDFKTKKIFVGGIPTAVSEDELKSFFSKYGKVVQHEIIRDHATKRSRGFGFIVFDNDRDVDNILSDGNMIDMAGTQVEIKKAEPKKSSNPASLPPFTSDSRARSYNNAFDGFGDSYGSFSNSSYGPSSYRSLGGFGARYGDYGGYGGGDDFSGSFGGYGGAAGAAGGYAGYRAEPSFGYSSRYGSYMGALGGGYGGGGLGTYARGGGGYGSYGGPGTSGGYESGPGAGYGGAGGMYASRGSYGGSSRYHPYAR 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0474 349 SUPERFAMILY RNA-binding domain, RBD 11 94 IPR035979 GO:0003676
Lal18g0474 349 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 78 IPR000504 GO:0003723
Lal18g0474 349 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 104 164 IPR000504 GO:0003723
Lal18g0474 349 SMART rrm1_1 15 86 IPR000504 GO:0003723
Lal18g0474 349 SMART rrm1_1 103 176 IPR000504 GO:0003723
Lal18g0474 349 Gene3D - 91 188 IPR012677 -
Lal18g0474 349 Gene3D - 14 90 IPR012677 -
Lal18g0474 349 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 349 - -
Lal18g0474 349 PANTHER OS08G0320100 PROTEIN 1 349 - -
Lal18g0474 349 SUPERFAMILY RNA-binding domain, RBD 92 193 IPR035979 GO:0003676
Lal18g0474 349 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 90 IPR000504 GO:0003723
Lal18g0474 349 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 102 180 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0474 Lal-Chr18 3928238 3931482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0474 4 164 Eukaryotic Initiation Factors Gene Family AT1G71770 25.698 5.53e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0474 K12741 - gmx:100801373 395.201