Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0473 ATGGGTTATACATGTGATTTTTGTGGAGAGCAGAGGTCCATGGTGTACTGCCGCTCCGATGCTGCATGCTTATGTTTGTCATGTGATAGAAACGTTCATTCGGCTAACGCTCTTTCTAGGCGTCACTCGCGAACCCTTTTATGTGAGAGATGTAATTCACAACCTGCCTCTGTAAGATGTTCCGAAGAGAAAGTTTCACTTTGTCAAAATTGTGATTGGTTGGGTCATGGTTCCTCGACGTCTTCTTCAACACATAAGAGACAAACAATCAATTGCTACTCCGGCTGCCCATCATCAGAAGAACTGTCTTCTATATGGTCATTTGTCTTAGATATCCCTTCTATGAGTGGATCTTCATGTGAGCAGGAACTAGGTTTAATGAGTATTAATGAGAACAGCATCAAGAGTTCTTCGGTTGCTCCAGAAAATCAGAATGGGATTGGTTCTGATCAAGTTAATGTTCTACCCGGTAAAGATAAGTATCGGGGTGGTGCTTCTTCTAAGGCTGGGTCAAGCACAAAACCTTCCGGTCTGGACCATCCAGCTGGAACTTCCAATCAATGCCCGCCGAAGTTCTACTGTCCTGGTACAAAATGCCCTTCAATATGTGAAGATAATATGTATCCCGATTTTGACATGGATGAAGTGGATCTAAATCTTGAGAACTATGATGAACTATTTGGTATGACTCTTACGCATTCTGAAGACCTTTTCGAAAATGGTGGATTTGGTAGCTTGTTTGGGACGAAGGACATCATATCTGCTGAAGGTTCCGATTGTCTAGGTGCTGTTGCTGCCGAGGGGTCATCGGTTGAACTAGTCAATGCAATGCAACCGGCATGCAGCAACGCAGAATCTGCAGATTCCATATTGAGTACGAAAACTGAACCAATCATTTGTTTTACGTCAAGGCAAGTCCCATCAAACATTTCTTTTTCTGGAATTGTGGGAGAGAGTAATGCTGGAGACTATCAAGACTGCGGGGCTTCTTCAATGCTTCTCATGGAAGAGCCTCCTTGGCATCCTCGTCCTGAGAATTCCCTGCACTCATCTGTTAACCGCAGTAATGCTGTCTTGCGTTATAAGGAAAAGAGGAAGATACGCAAGTTTGACAAAAGAGTGAGGTATGCCTCTCGCAAAGAACGGGCTGATGTCAGAAGGCGTGTGAAGGGCCGATTCGTCAAAGTTGGTGATGCCTACGATTATGACCCTTTGAGCCCAACCAGAAGCTACTGA 1236 0.4442 MGYTCDFCGEQRSMVYCRSDAACLCLSCDRNVHSANALSRRHSRTLLCERCNSQPASVRCSEEKVSLCQNCDWLGHGSSTSSSTHKRQTINCYSGCPSSEELSSIWSFVLDIPSMSGSSCEQELGLMSINENSIKSSSVAPENQNGIGSDQVNVLPGKDKYRGGASSKAGSSTKPSGLDHPAGTSNQCPPKFYCPGTKCPSICEDNMYPDFDMDEVDLNLENYDELFGMTLTHSEDLFENGGFGSLFGTKDIISAEGSDCLGAVAAEGSSVELVNAMQPACSNAESADSILSTKTEPIICFTSRQVPSNISFSGIVGESNAGDYQDCGASSMLLMEEPPWHPRPENSLHSSVNRSNAVLRYKEKRKIRKFDKRVRYASRKERADVRRRVKGRFVKVGDAYDYDPLSPTRSY 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0473 411 ProSiteProfiles CCT domain profile. 354 396 IPR010402 GO:0005515
Lal18g0473 411 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 411 - -
Lal18g0473 411 MobiDBLite consensus disorder prediction 137 151 - -
Lal18g0473 411 MobiDBLite consensus disorder prediction 137 182 - -
Lal18g0473 411 MobiDBLite consensus disorder prediction 166 182 - -
Lal18g0473 411 Pfam CCT motif 354 396 IPR010402 GO:0005515
Lal18g0473 411 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 411 - -
Lal18g0473 411 CDD Bbox1_BBX-like 5 47 - -
Lal18g0473 411 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lal18g0473 411 SMART bboxneu5 48 90 IPR000315 GO:0008270
Lal18g0473 411 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Lal18g0473 411 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0473 Lal-Chr18 3922259 3927428 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0473 1 411 C2C2-CO-like Transcription Factor Family AT5G48250 58.095 1.39e-157 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lal18g0473 CCT 7.5e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0473 - - gmx:100796748 610.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0473 18 3922259 3927428 Lal18g0473 18 3922259 3927428 ECH